Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n13
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0086 + 31544761-31544961,31546036-31546201,31546568-315466...    75   5e-14
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    28   5.4  
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91...    27   9.5  

>03_06_0086 +
           31544761-31544961,31546036-31546201,31546568-31546626,
           31547202-31547320,31547410-31547647,31547718-31547841,
           31547989-31548068
          Length = 328

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 40/131 (30%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
 Frame = +2

Query: 80  ELKWKKLDNSNLRGYTAVVPSVAVGNVGQLACDLLISSLRMKKIASINSIAIVPILGYDP 259
           E+  +  D+S L   +   P++++GNVGQLA DLL+SS R +++A ++  +++P  G D 
Sbjct: 49  EITTRTRDSSILLSDSEATPALSIGNVGQLAVDLLVSSSRARRVAYLDEPSVLPCAGNDA 108

Query: 260 YDHNTI-DLSMCCELYKCDEKKIIVLQLRAPLVYKYATSFLKQILEKFKESGINDIVILT 436
           +  + + DL++  E Y+    ++  +Q R+P++     SF K +   F  S   D V++ 
Sbjct: 109 FGPDAVGDLALALEAYESPSHRLAFIQQRSPIITGMVVSFAKNV-ANFISSIEKDHVVIL 167

Query: 437 SSYAHEKKHIM 469
           SS    K+ I+
Sbjct: 168 SSLDSGKRRII 178


>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/103 (21%), Positives = 46/103 (44%)
 Frame = +2

Query: 305  KCDEKKIIVLQLRAPLVYKYATSFLKQILEKFKESGINDIVILTSSYAHEKKHIMTSPFR 484
            K D K  +++Q    +++  A S +KQ+  +  ++  N++++   SY+    H       
Sbjct: 2142 KFDGKSSLLIQ--PSMLFLIAVSLMKQLRAELSDTTANNLIVQNLSYSVCNLHT------ 2193

Query: 485  YLVNEYSSYKNEIQKLNWTEHEIIENGIKILGGGFASLLYGIC 613
             LV + +S       L+ ++H     G ++ G   A   + IC
Sbjct: 2194 -LVKQTTSPHQFWSSLSSSDHSAFLEGFELFGSTKAKNAFLIC 2235


>03_01_0115 -
           915142-915321,915397-915631,916301-916386,916474-916590,
           917271-917591,918386-918772
          Length = 441

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 74  KMELKWKKLDNSNLRGYTAVVPSV 145
           + +LK K +DNSN R +  +VP V
Sbjct: 271 RSDLKSKVIDNSNFRNFLELVPEV 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,280
Number of Sequences: 37544
Number of extensions: 319759
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)