Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n13
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013356-1|AAH13356.1|  264|Homo sapiens tumor necrosis factor s...   113   4e-25
AF276707-1|AAK69439.2|  264|Homo sapiens hepatocellular carcinom...   113   4e-25
AF068295-1|AAF65184.1|  256|Homo sapiens HDCMC29P protein.            105   2e-22
AF168712-1|AAF87314.1|  224|Homo sapiens x 003 protein protein.        77   7e-14
CR457181-1|CAG33462.1|  224|Homo sapiens HCCA3 protein.                76   1e-13

>BC013356-1|AAH13356.1|  264|Homo sapiens tumor necrosis factor
           superfamily, member 5-induced protein 1 protein.
          Length = 264

 Score =  113 bits (273), Expect = 4e-25
 Identities = 65/181 (35%), Positives = 112/181 (61%), Gaps = 16/181 (8%)
 Frame = +2

Query: 110 NLRGYTAVVPSVAVGNVGQLACDLLISSLRMKKIASINSIAIVPILGYDPY---DHNTID 280
           +L G+T ++P+V+VGNVGQLA DL+IS+L M KI    +  +VP++G +PY   + N+ +
Sbjct: 11  DLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTE 70

Query: 281 LSMCCELYKCDEKKIIVLQLRAPLVYKYATSFLKQILEKFKESGINDIVILTSSYAHEKK 460
           LS+  E+Y    +K++ LQLR+  +   +  F +++L   K SG   +++L+SS+++++ 
Sbjct: 71  LSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRN 130

Query: 461 --HIMTSPFRYLV--NEYSSYKNEIQKLNWTEHE------IIENG---IKILGGGFASLL 601
              + ++PFRYL+  +   S +N+I+ LNW E E       I++    I+I GGG    L
Sbjct: 131 DLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITKTL 190

Query: 602 Y 604
           Y
Sbjct: 191 Y 191


>AF276707-1|AAK69439.2|  264|Homo sapiens hepatocellular carcinoma
           susceptibility protein protein.
          Length = 264

 Score =  113 bits (273), Expect = 4e-25
 Identities = 65/181 (35%), Positives = 112/181 (61%), Gaps = 16/181 (8%)
 Frame = +2

Query: 110 NLRGYTAVVPSVAVGNVGQLACDLLISSLRMKKIASINSIAIVPILGYDPY---DHNTID 280
           +L G+T ++P+V+VGNVGQLA DL+IS+L M KI    +  +VP++G +PY   + N+ +
Sbjct: 11  DLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTE 70

Query: 281 LSMCCELYKCDEKKIIVLQLRAPLVYKYATSFLKQILEKFKESGINDIVILTSSYAHEKK 460
           LS+  E+Y    +K++ LQLR+  +   +  F +++L   K SG   +++L+SS+++++ 
Sbjct: 71  LSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRN 130

Query: 461 --HIMTSPFRYLV--NEYSSYKNEIQKLNWTEHE------IIENG---IKILGGGFASLL 601
              + ++PFRYL+  +   S +N+I+ LNW E E       I++    I+I GGG    L
Sbjct: 131 DLQLRSTPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITKTL 190

Query: 602 Y 604
           Y
Sbjct: 191 Y 191


>AF068295-1|AAF65184.1|  256|Homo sapiens HDCMC29P protein.
          Length = 256

 Score =  105 bits (251), Expect = 2e-22
 Identities = 61/172 (35%), Positives = 105/172 (61%), Gaps = 16/172 (9%)
 Frame = +2

Query: 137 PSVAVGNVGQLACDLLISSLRMKKIASINSIAIVPILGYDPY---DHNTIDLSMCCELYK 307
           P+V+VGNVGQLA DL+IS+L M KI    +  +VP++G +PY   + N+ +LS+  E+Y 
Sbjct: 12  PAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAEVYS 71

Query: 308 CDEKKIIVLQLRAPLVYKYATSFLKQILEKFKESGINDIVILTSSYAHEKK--HIMTSPF 481
              ++++ LQLR+  +   +  F +++L   K SG   +++L+SS+++++    + ++PF
Sbjct: 72  LPSRELVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRSTPF 131

Query: 482 RYLV--NEYSSYKNEIQKLNWTEHE------IIENG---IKILGGGFASLLY 604
           RYL+  +   S +N+I+ LNW E E       I++    I+I GGG    LY
Sbjct: 132 RYLLTPSTQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITKTLY 183


>AF168712-1|AAF87314.1|  224|Homo sapiens x 003 protein protein.
          Length = 224

 Score = 76.6 bits (180), Expect = 7e-14
 Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 16/151 (10%)
 Frame = +2

Query: 200 MKKIASINSIAIVPILGYDPY---DHNTIDLSMCCELYKCDEKKIIVLQLRAPLVYKYAT 370
           M KI    +  +VP++G +PY   + N+ +LS+  E+Y    +K++ LQLR+  +   + 
Sbjct: 1   MSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSK 60

Query: 371 SFLKQILEKFKESGINDIVILTSSYAHEKK--HIMTSPFRYLV--NEYSSYKNEIQKLNW 538
            F +++L   K SG  ++++L+SS+++++    + ++PFRYL+  +   S +N+I+ LNW
Sbjct: 61  PFCEKLLSWVKSSGCAEVIVLSSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNW 120

Query: 539 TE-------HEIIENG--IKILGGGFASLLY 604
            E        EI ++   I+I GGG    LY
Sbjct: 121 EEMDKSRCIPEIDDSEFCIRIPGGGITKTLY 151


>CR457181-1|CAG33462.1|  224|Homo sapiens HCCA3 protein.
          Length = 224

 Score = 75.8 bits (178), Expect = 1e-13
 Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 16/151 (10%)
 Frame = +2

Query: 200 MKKIASINSIAIVPILGYDPY---DHNTIDLSMCCELYKCDEKKIIVLQLRAPLVYKYAT 370
           M KI    +  +VP++G +PY   + N+ +LS+  E+Y    +K++ LQLR+  +   + 
Sbjct: 1   MSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAEVYSLPSRKLVALQLRSIFIKYKSK 60

Query: 371 SFLKQILEKFKESGINDIVILTSSYAHEKK--HIMTSPFRYLV--NEYSSYKNEIQKLNW 538
            F +++L   K SG   +++L+SS+++++    + ++PFRYL+  +   S +N+I+ LNW
Sbjct: 61  PFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRSTPFRYLLTPSMQKSVQNKIKSLNW 120

Query: 539 TEHE------IIENG---IKILGGGFASLLY 604
            E E       I++    I+I GGG    LY
Sbjct: 121 EEMEKSRCIPEIDDSEFCIRIPGGGITKTLY 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,394,498
Number of Sequences: 237096
Number of extensions: 2004532
Number of successful extensions: 7111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7106
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)