Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n13
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine re...    28   4.9  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = +2

Query: 440 SYAHEKKH----IMTSPFRYLVNEYSSYKNEIQKL 532
           S AHEK+     ++T P ++++ + + YKNEI+ L
Sbjct: 90  SEAHEKEKMSSGLLTPPMKHILEDRTKYKNEIKLL 124


>AF022979-8|AAB69906.2|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein38 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 443 SYLLISQYHLYRFL*IFQESVSKMTLHIY 357
           SY L+  + +YRFL I+  S++++  H Y
Sbjct: 102 SYALLLVHFIYRFLVIYDSSLTRLHFHWY 130


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 371 SFLKQILEKFKESGINDIVILTSSYAH-EKKHIMTSPFRYLVNEYSSYKNEIQKLNWTEH 547
           + L+Q+L KF   G   IV ++++  + +        F Y  N       E  K+  T H
Sbjct: 307 AILEQLLAKFLYKGTGQIVGMSATLPNIDDLKFALRAFVYSTNFRPVELTEFVKIGQTMH 366

Query: 548 EIIENG 565
           ++ ENG
Sbjct: 367 QVSENG 372


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = -1

Query: 564 PFSMISCSVQFNFCISFLYELYSFTKYLNGDVIMCFFSCA*LLVNITISF 415
           P  + S  + +  CI++ Y++++  +Y    + +CF  CA   +   ++F
Sbjct: 223 PILIASFILYWRKCITWAYDVFALCEYSGVFLNICFHGCAFFDIRYKVTF 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,204
Number of Sequences: 27780
Number of extensions: 345916
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)