Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20n13
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 2.5
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 23 2.5
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 23 2.5
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 3.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 3.3
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 5.8
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 5.8
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 23.0 bits (47), Expect = 2.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Frame = +1
Query: 580 WRFCFFTLWNMYRAVGTLFN 639
W C+F +W + G + N
Sbjct: 184 WILCYFCIWKGVKTTGKVVN 203
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 83 LKWKKLDNSNLRGYTAVVPSV 145
L WKK+ + NL G T ++ V
Sbjct: 106 LDWKKIFDINLLGLTCMIQEV 126
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 23.0 bits (47), Expect = 2.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -2
Query: 305 CIIHNTLINLLYYDRMGHTPILELLQY 225
C+++ T ++ D TP++ LQY
Sbjct: 14 CLLNETAKAIIGVDECQATPVIHFLQY 40
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.6 bits (46), Expect = 3.3
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFASLLYG--ICIEQLVP 631
N Y++YK +N+ E I + I G F G I I++ +P
Sbjct: 101 NNYNNYKKLYYNINYIEQIPIPVPVPIYCGNFPPRPMGPWISIQEQIP 148
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 22.6 bits (46), Expect = 3.3
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 479 FRYLVNEYSSYKNEIQKLNWTEHEIIENGIKILGGGFASLLYG--ICIEQLVP 631
+ Y N Y++YK +N+ E + + I G F G I +++ +P
Sbjct: 104 YNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRPMGPWISMQEQIP 156
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 494 NEYSSYKNEIQKLNWTEHEIIENGIKILGGGFAS 595
N Y++YK +N+ E + + I G F S
Sbjct: 101 NNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPS 134
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 5.8
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 485 YLVNEYSSYKNEIQKLNWTEHEIIENGIKILGGGFASLLYG--ICIEQLVP 631
Y N Y++YK +N+ E + + I G F G I +++ +P
Sbjct: 96 YNNNNYNNYKKLYYNINYIEQVPVPIPVPIYCGNFPPRPMGPWISMQEQIP 146
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,102
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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