Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n10
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0185 + 13959652-13959718,13961374-13961648,13961866-139619...    33   0.20 
01_02_0129 + 11410345-11410487,11410908-11411014,11414512-114147...    29   3.2  

>08_02_0185 +
           13959652-13959718,13961374-13961648,13961866-13961972,
           13962932-13962974,13964633-13964824
          Length = 227

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 337 IENEIKNSRFKLLDTTKVELRTRLPPKVNVLKLTLNFNE 221
           ++NE+K+  + +  TTK  L++  PP++ +LK  LN  +
Sbjct: 161 MKNEVKDIMYHIYTTTKESLKSISPPEMKLLKYLLNIED 199


>01_02_0129 +
           11410345-11410487,11410908-11411014,11414512-11414786,
           11415014-11415179,11415681-11415922,11417046-11417141,
           11417574-11417761,11418573-11418789
          Length = 477

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 334 ENEIKNSRFKLLDTTKVELRTRLPPKVNVLKLTLNFNE 221
           E E+K+    +  TTK  L++  PP++ +LK  LN  +
Sbjct: 341 EAEVKDIMCHIYTTTKESLKSISPPEMKLLKYLLNIED 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,458
Number of Sequences: 37544
Number of extensions: 191772
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)