Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n10
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    28   6.6  
X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    27   8.7  
U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate fi...    27   8.7  
U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate fi...    27   8.7  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = -1

Query: 370 SYGDYFYKFI*IENEIKNSRFKLLDTTKVELRTRLPPKVNVLKLTLNFNENAIHKMNTLN 191
           SYG Y   +   +  ++ S+ K +++ K ++   +P  +  +K  +  N+  +H+MNT N
Sbjct: 464 SYGTYVSSWKISQQALEISK-KQVESHKPDVLFIIPRYMQNIKDPIRVNDTIVHEMNT-N 521

Query: 190 ELYKRKLIHR 161
             Y  K + +
Sbjct: 522 LAYYEKFVRK 531


>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 328 EIKNSRFKLLDTTKVELRTRLPPKVNVLKLTL-NFNENAIHKMNTLNEL 185
           EIK    K++ TT+V+L T    K++ ++ ++ + NE A+ +   + ++
Sbjct: 248 EIKAEYDKIIQTTRVDLETIFQSKISAVESSIVSKNEAAVFRQEEIRKM 296


>U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform c protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 328 EIKNSRFKLLDTTKVELRTRLPPKVNVLKLTL-NFNENAIHKMNTLNEL 185
           EIK    K++ TT+V+L T    K++ ++ ++ + NE A+ +   + ++
Sbjct: 248 EIKAEYDKIIQTTRVDLETIFQSKISAVESSIVSKNEAAVFRQEEIRKM 296


>U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform a protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 328 EIKNSRFKLLDTTKVELRTRLPPKVNVLKLTL-NFNENAIHKMNTLNEL 185
           EIK    K++ TT+V+L T    K++ ++ ++ + NE A+ +   + ++
Sbjct: 248 EIKAEYDKIIQTTRVDLETIFQSKISAVESSIVSKNEAAVFRQEEIRKM 296


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = -1

Query: 463 QHIIHSNKPTSTDAFTSLNYILKCETIKSDQSY----GDYF-YKFI*IENEIKNSRFKLL 299
           +HI HS  P    A  ++ + +K E I S+  +     +Y  Y+   I+N++   R K+ 
Sbjct: 474 EHIYHSEMPEKHSARRAIAFGVKIEEIHSETEFEKLLSEYVEYEESDIQNQVSIDR-KID 532

Query: 298 DTTKVELRTRLPPKVNVLKLTLNFNENAIHKMNTLNELY 182
             TK++  T    +   +++     E A+  M   N  Y
Sbjct: 533 IITKIKTITLNDVRAKAIEMQKQIVEKAVDLM-VFNSFY 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,988
Number of Sequences: 27780
Number of extensions: 207944
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)