Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n09
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   7.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    22   9.3  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    22   9.3  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 85  LKLYILKPDVTEFEFILSKSSMVNLN 8
           +KL +LK +   F+F LS  +   +N
Sbjct: 138 MKLMVLKDNANNFDFSLSNITTEKMN 163


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 109  FFILFNYLLKLYIL 68
            FF+LFN +  +YIL
Sbjct: 1192 FFVLFNLVSMIYIL 1205


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 52  EFEFILSKSSMVNLNLL 2
           E EF + KSS +NL+ L
Sbjct: 108 EIEFSIQKSSKINLHTL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.295    0.110    0.295 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,119
Number of Sequences: 5004
Number of extensions: 1799
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)