Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n07
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   1.9  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   3.3  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   4.4  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.8  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.8  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   5.8  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   7.7  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    25   7.7  
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.7  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.7  

>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/103 (23%), Positives = 47/103 (45%)
 Frame = +2

Query: 20  NADRCIKNFSLLGNEYHVLVSSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHLKRLFAN 199
           N  + +K  S+L   +   + SL   L+++    +    +   +Y I+ RL      ++ 
Sbjct: 489 NNCKILKTSSVLPIPFAHAIESLLFSLDEENELQVSCAASGTLNYLIRHRLFS----YST 544

Query: 200 LPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGC 328
           L  + ++  V D     LYK Q +   NF+++  DIS  ++ C
Sbjct: 545 LVQKGFSGSVFDC----LYKFQKDIAFNFLERTSDISAYEIAC 583


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 NLPAESYNSCVNDLTDMYLYKEQNETITNF 286
           N+P +S+ S VN L + Y  KE  +  T+F
Sbjct: 670 NMPVKSFFSTVNQLEETYEKKELKDISTSF 699


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 329 RKLMRIYLNTDTF-SGQLPAYLTHYVNYPHKNLCDQNWKRF 448
           +K+  I LN +T   G L AY+ + V  P+ N+ +  W+ F
Sbjct: 124 KKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDF 164


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 242 DMYLYKEQN-ETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPA 385
           D  +YK Q+  T+ N +K+  +I+  D   R+++RI+ N   ++G  PA
Sbjct: 223 DSLVYKPQDLRTLKNMIKEG-NITEVDELYREVLRIFANCKMYNGSDPA 270


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 125 KDIF--TNKFDYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYK 259
           K+IF   ++ D  +K+    +KR  ++L +E+Y+S + ++  + L K
Sbjct: 28  KNIFHTESQLDSSLKKNTAFMKRCKSSLTSENYDSFIKEIKTLSLKK 74


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 155 KIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYKEQN 268
           KI R +N   ++F  +  E  +SC+  L D Y Y  +N
Sbjct: 510 KIYRLVN--SQVFDEIALELVHSCIRSLVDAYRYFSRN 545


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 406 LSTQKFV*PKLEA-VYVMYFFVILIKQHNFLTI 501
           ++T  F+   L A +YV+YFF  LI++H+ L +
Sbjct: 488 MATLAFISLSLVATIYVIYFFGHLIRKHSRLAV 520


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 227 VNDLTDMYLYKEQNETITNFVKKILDISGP 316
           +N L D  L+   N++  N++  +LD SGP
Sbjct: 204 LNYLKDKILFAPDNQSAWNYLCGVLDKSGP 233


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 83  SLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHL---KRLFANLPAESYNSCVNDLTDMYL 253
           +L +    ++  +LKD   +K +Y I+   N +   +    NLP E+    + D+T+   
Sbjct: 467 TLLQAFESEIRLMLKDYLISKEEY-IENSGNFVVGTEMSIYNLPGENEEDKLFDVTNEIA 525

Query: 254 YKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSG 373
            + ++      + ++++   P+L   K        + FSG
Sbjct: 526 VENKSNAFYARINELVNEKAPELILNKSNASVSTIELFSG 565


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 182 KRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKI-LDISG 313
           +RL +  PA+ Y +C+ +L D+Y  +   E +   V+K  L +SG
Sbjct: 65  ERLASENPAD-YVACIEELLDIYPMQGGREYLETLVEKYNLHMSG 108


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 293 KILDISG--PDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNWKRFMSCI 460
           KILD+    P+  C   ++ Y +       + + + HY  Y   N C  N+K F  C+
Sbjct: 21  KILDLKKGIPEDPCS--LQYYFDQMAMCLTVFSQMNHYYRYGEYNRCKGNFKDFKWCL 76


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 276 MVSFCSLYKYMSVRSLTH 223
           +VSF  LY Y SV+ L H
Sbjct: 323 LVSFAHLYSYTSVKCLVH 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,725
Number of Sequences: 5004
Number of extensions: 47763
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)