Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n07
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    33   0.14 
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    30   1.3  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    27   9.4  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    27   9.4  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    27   9.4  
U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    27   9.4  

>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +2

Query: 125 KDIFTNKFDYKIKRRLNHLKRLFANLPAESYNS-----CVNDLTDMYLYKEQNETITNFV 289
           KDI   + D +  R    +K+LFA LP   Y S     C N+    Y Y  + E IT   
Sbjct: 399 KDIKDIEDDLQRMRNKPEIKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPG 458

Query: 290 KKILDI-SGPDLGCRKLMRIYLNTDTFS 370
            +  D    PD+ C ++   ++  +T S
Sbjct: 459 PQYCDFKQHPDITCMRVNATHIERETLS 486


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 382 RLFNSLRKLSTQKFV*PKLEAVYVMYFFVILIKQHNFL 495
           RL +S+R+LSTQKF+       +V+YFF  ++   +FL
Sbjct: 115 RLMSSVRRLSTQKFI----GNCFVVYFFSAVVLIFSFL 148


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 382 RLFNSLRKLSTQKFV*PKLEAVYVMYFFVILIKQHNFL 495
           RL +S+R+LSTQKF+       +V+YFF  ++   +FL
Sbjct: 115 RLMSSVRRLSTQKFI----GNCFVVYFFSAVVLIFSFL 148


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 436 LEAVYVMYFFVILIKQHNFLTIHLFKFKNK*NS**LSTRKIINRR 570
           L  +++   F+I+ +Q + + + L +F  K NS  +  RK IN+R
Sbjct: 113 LHFLFISCHFIIIFEQTSRIDLELMRFLKKVNSARIQLRKKINQR 157


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 LNHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETIT 280
           L  + RLF  LPAE  N+ V+D+T   +   Q+ + T
Sbjct: 739 LKMVTRLFEELPAEELNNIVDDITPTIIKAYQSTSST 775


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 183  SACLPTCRRNRTIRVSMISPTCIC 254
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 183  SACLPTCRRNRTIRVSMISPTCIC 254
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


>Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical
           protein D2023.6 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 500 IVRKLCCFISITKKYMT*TASNFGHTNFCVDSLRN 396
           I+RK+  F  +TK     T +  G+T + VDS+ +
Sbjct: 2   IIRKILAFKPLTKVLFVGTGAGAGYTAYTVDSVED 36


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 147 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 269
           L  +L  DS +S A LP C+RN T+   ++    SP TC+    +T
Sbjct: 82  LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 147 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 269
           L  +L  DS +S A LP C+RN T+   ++    SP TC+    +T
Sbjct: 82  LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 147 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 269
           L  +L  DS +S A LP C+RN T+   ++    SP TC+    +T
Sbjct: 82  LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127


>U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical
           protein C18H9.1 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 80  SSLQRVLNDQLMCLLKDIFTNKFD-YKIKRRLNHLKR-LFANLPAESYNSCVNDLTDMYL 253
           S L+R LND+    L+ +  NKFD    ++ L    R ++ ++  E ++S V +L +   
Sbjct: 28  SVLERFLNDKQKTELRKMVHNKFDGSNAEQVLEESNRYVYGHVTEEQWHSIVPELAEYQA 87

Query: 254 YKEQNETITNFVKKIL 301
            K +       + K L
Sbjct: 88  KKHECSVYAQLLPKPL 103


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 147 LIIKLNADSIISSACLPTCRRNRTIRVSMI----SP-TCICTRNKT 269
           L  +L  DS +S A LP C+RN T+   ++    SP TC+    +T
Sbjct: 82  LFTQLWHDSALSFAHLPACKRNITMETRLLPKIWSPNTCMINSKRT 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,784
Number of Sequences: 27780
Number of extensions: 276562
Number of successful extensions: 696
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)