Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20n05
(233 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 29 0.062
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 0.77
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 1.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 24 3.1
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 23 4.1
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 23 4.1
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 23 5.4
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 23 7.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 22 9.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 22 9.4
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 22 9.4
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 29.5 bits (63), Expect = 0.062
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 47 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 139
VHGL C ++LY Y C S+ +YY Y + F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 9 LELLILLGHTMGAYTDYRYA 68
+E +IL+GH+MG Y YA
Sbjct: 171 IEKMILVGHSMGGYLSAVYA 190
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 226 FKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 119
FKD+ + + Y ++ L + L + + ++HS PIT
Sbjct: 1737 FKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 205 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 104
I+ +KAH+N +NIK F + +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 30 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 125
GH M TD YA+ C ++++ + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 184 INELNIKLLSTSFVFKHSKPITIVKL 107
I +++ L S V+KHS P+T ++L
Sbjct: 281 IRFMSLDLTKLSQVYKHSLPVTDMQL 306
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 68 QIMLYGYIVCFSYEFY 115
Q + Y ++CFSY +Y
Sbjct: 216 QNLYYDLLLCFSYSYY 231
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -2
Query: 184 INELNIKLLSTSFVFKHSKPITIVKLITETNNITI*H 74
+NE + L+ S+ FKH + + + N++ + H
Sbjct: 2 LNERDFDLIFDSYDFKHEGKVHLSNFLPIINDLQLLH 38
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 22.2 bits (45), Expect = 9.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 18 LILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTI--VMG-LECLKTKLVDSSLMFNSFMC 188
LIL + + R+ + YM +F S+++FT MG + + TK++ S + N
Sbjct: 861 LILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAWKTMGAVTFIATKII--SRIANCVKS 918
Query: 189 ALYI 200
LYI
Sbjct: 919 KLYI 922
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 151 SFVFKHSKPITI 116
SF+FK +KP+T+
Sbjct: 118 SFLFKQNKPLTV 129
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 6 FLELLILLGHTMGAYTDY 59
F +L +L H +G Y DY
Sbjct: 754 FRDLTQVLAHDLGMYADY 771
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,743
Number of Sequences: 5004
Number of extensions: 13938
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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