Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n05
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       25   5.4  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    25   5.4  
AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical...    25   5.4  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    25   5.4  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    25   7.2  
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    25   7.2  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81595-6|CAB04754.2|  295|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81595-5|CAB04755.2|  289|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical p...    25   9.5  
EF445109-1|ABQ01576.1|  273|Caenorhabditis elegans scramblase 1 ...    25   9.5  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 220 DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 119
           D  V +I Y     ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 48  YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 218
           Y +YR    +C++    + ++S    I+ G+ C    ++D+ L  +SF+CA+     T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171

Query: 219 SLKKK 233
            L ++
Sbjct: 172 LLHER 176


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 72  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 170
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 72  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 170
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>AF101318-11|ABA00165.1|   67|Caenorhabditis elegans Hypothetical
           protein Y73C8C.12 protein.
          Length = 67

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 221 RPHCCNHNVQS 189
           RPHCC +++QS
Sbjct: 47  RPHCCRYSIQS 57


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 72  SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 170
           +C+ +    SVM   I +   C    L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  ILLGHTMGA-YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSF 182
           ++LG T GA +T YR  +   M  L+ S++   +  G +C   KL+  S M N +
Sbjct: 249 VILGATGGAFFTSYR-KREGNMTKLYTSLVPANLSAGFKC--EKLIKPSSMPNFY 300


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 65  CQIMLYGYIVCFSYEFYYC 121
           C   +  Y+ CFS + YYC
Sbjct: 338 CNNYIQSYVNCFSTKCYYC 356


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
            R07G3.3a protein.
          Length = 1982

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 226  FKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 128
            F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1365 FDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
            R07G3.3b protein.
          Length = 1987

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 226  FKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 128
            F D T  I  YK  I  LN+K+L    + K  K
Sbjct: 1365 FDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 30  GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 125
           GH +  YTDY  + + ++ +  V +M+  +++
Sbjct: 186 GHVISTYTDYYTSVAIFIAMSSVDIMTLILLI 217


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 232 FFFKDHTVAIIMYKAHINELNIKLLSTSF 146
           F+  + T   I+Y  ++ ELNIK L   F
Sbjct: 127 FYKLNPTGRYILYSLNLTELNIKTLKAKF 155


>Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical
           protein Y6G8.2 protein.
          Length = 964

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 226 FKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPITIVKL 107
           F +H  AIIM   + N LN+ +LST     H K   IV L
Sbjct: 245 FNNHA-AIIMSHLNSNFLNLIILSTPIPGTHLKFDAIVTL 283


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 20  YSIRPHNGRVHGLSICQIMLYGYIVCFSYEFYYCYGF 130
           Y   PH+     + IC I+LY Y+   SY   + +G+
Sbjct: 196 YHSYPHSINNFAVGICTIILYLYL---SYRLIFKFGY 229


>Z81595-6|CAB04754.2|  295|Caenorhabditis elegans Hypothetical
           protein T22H2.5b protein.
          Length = 295

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 78  NMIWHIDNPCTRPLCG 31
           N+I+ ID PC   LCG
Sbjct: 197 NVIFQIDGPCCCMLCG 212


>Z81595-5|CAB04755.2|  289|Caenorhabditis elegans Hypothetical
           protein T22H2.5a protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 78  NMIWHIDNPCTRPLCG 31
           N+I+ ID PC   LCG
Sbjct: 197 NVIFQIDGPCCCMLCG 212


>U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical
           protein F26B1.1 protein.
          Length = 304

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 90  LFVSVMSFTIVMGLECLKTKLVDS 161
           +FVS++  T V+GLEC K K  +S
Sbjct: 30  IFVSIL-LTPVIGLECAKKKKKES 52


>EF445109-1|ABQ01576.1|  273|Caenorhabditis elegans scramblase 1
           protein.
          Length = 273

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 78  NMIWHIDNPCTRPLCG 31
           N+I+ ID PC   LCG
Sbjct: 181 NVIFQIDGPCCCMLCG 196


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 229 FFKDHTVAIIMYKAHINELNIKLLSTSF 146
           + K+HT  I  Y A  NEL  +L    F
Sbjct: 123 YLKEHTTDITHYVAFFNELESELARKEF 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,798,425
Number of Sequences: 27780
Number of extensions: 76389
Number of successful extensions: 239
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)