Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n05
         (233 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   1.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   6.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   8.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 81 YNMIWHIDNP 52
          Y + WH+D P
Sbjct: 39 YELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -3

Query: 81 YNMIWHIDNP 52
          Y + WH+D P
Sbjct: 39 YELFWHVDQP 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 117 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSL 224
           IV+G   + T +  +S + NS     YI  + +W L
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFL 299


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 62  ICQIMLYGYIVCF 100
           I  ++L+G ++CF
Sbjct: 14  IINVLLHGQVICF 26


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -1

Query: 212 CCNHNVQSAHKR 177
           C +H++++AH R
Sbjct: 150 CLHHDIENAHIR 161


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  ATQWARTRIIDMPNHVIW 84
           A+++A  R+I +P + +W
Sbjct: 71  ASEFAGIRVIRVPYNRVW 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,392
Number of Sequences: 438
Number of extensions: 768
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)