Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   132   4e-32
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.036
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.44 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.77 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.77 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   1.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.8  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    26   5.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   7.2  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   9.5  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   9.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.5  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  132 bits (319), Expect = 4e-32
 Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
 Frame = +1

Query: 112 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 288
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV ++   L 
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73

Query: 289 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 462
             + +ED      ++R  VL EL EL++ V+ +L +++  D++  +   +D    + HL 
Sbjct: 74  GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130

Query: 463 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASE 642
             + Y    E I  +Y+ A+++Y CGNY  ++  LY  +      + N  S  WGK ASE
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188

Query: 643 IL 648
           IL
Sbjct: 189 IL 190


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -2

Query: 612 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 433
           Q++ V W+HHQ       C   I + F  IFGQ I AID ++ KL  +  +    +SF  
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384

Query: 432 P 430
           P
Sbjct: 385 P 385


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 415 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 546
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 127  FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 246
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 537 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 376
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 226 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 405
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++ E VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 406 VMK 414
           V K
Sbjct: 248 VCK 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 400  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 522
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 655 FVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 557
           FVP    P  P K P      L  +P+DK +DMM
Sbjct: 166 FVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 373  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 492
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 601 CQLATSPVDKSKDMMLTPHNFHIHSDIW 518
           C++    V KS D+ +  H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 265 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 384
           VTDI+ +L  + DTP   ++  G   +     L+  +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 190 KETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 321
           ++ YD SE+L  ++E+ S      Y      +  P E T E ++
Sbjct: 163 QKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQEPVV 206


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 409 MKTIETMRDPKTLINHLSTNKEYEFKIEMID 501
           MKTIE    P  L   +  +K Y   +E ID
Sbjct: 64  MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 441 FRIPHGFNCFHYIISLHESQYWLYC---ILKFLQFRKNY--TSPLYNFFRSVFFRIEHSS 277
           F +PHG   ++ ++    +QY ++    I+  L F+K+    S  +  +    FR+E S 
Sbjct: 69  FFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESR 128

Query: 276 DVSN 265
           +V +
Sbjct: 129 NVED 132


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 330  SPLYNFFRSVFFRIEHSSDVSNIIYH 253
            S L N+F+ +    EHS D ++ + H
Sbjct: 990  SKLVNYFKRIHGTNEHSKDTADFVLH 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,375
Number of Sequences: 5004
Number of extensions: 53003
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)