Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20n04
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 130 1e-30
Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical pr... 33 0.23
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 0.71
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 28 5.0
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z50070-8|CAA90397.1| 263|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 27 8.8
AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical... 27 8.8
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 27 8.8
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 130 bits (313), Expect = 1e-30
Identities = 64/185 (34%), Positives = 115/185 (62%), Gaps = 3/185 (1%)
Frame = +1
Query: 109 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 288
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++L+KTNMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57
Query: 289 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 459
Y + P I ++ ++ E EL+ V+ V+ +++ +V + ++ R+ ++ HL
Sbjct: 58 YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117
Query: 460 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAS 639
+ N + F ++M+D++++ +K+ YECGNY ++ LY+ + +++ D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175
Query: 640 EILVQ 654
EIL+Q
Sbjct: 176 EILLQ 180
>Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical
protein T16H12.2 protein.
Length = 181
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 226 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 378
K I+ +T +V + +LYP++DTP +I++ R L Q+ +D EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -2
Query: 501 IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 322
++H + K I C + V ++ H F +++++ + S+Y + I+ LQ+ TS
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782
Query: 321 YNFFRSVFFRIEHSSDV 271
YN F + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 145 LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 309
L R ++ L EF +TY E L+AKLE + + + ++ PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 196 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 330
T+ Q E L+ T +ID+ I M+Y + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 196 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 330
T+ Q E L+ T +ID+ I M+Y + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 384 QYWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNIIYHVSFAQN 235
++ YC+L + +TSP F SVF RI + I+Y + F ++
Sbjct: 170 KFGYYCLLGVISISYYFTSPQTTAFNSVFARIWQFL-IGMIVYLIYFKKS 218
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 469 KEYEFKIEMIDSMYRLAKYRYECGNYVE 552
K Y+ + ID ++RLAK+ E GN VE
Sbjct: 130 KRYDAGEKSIDVLWRLAKFCNEIGNRVE 157
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 469 KEYEFKIEMIDSMYRLAKYRYECGNYVE 552
K Y+ + ID ++RLAK+ E GN VE
Sbjct: 71 KRYDAGEKSIDVLWRLAKFCNEIGNRVE 98
>Z50070-8|CAA90397.1| 263|Caenorhabditis elegans Hypothetical
protein F43G6.8 protein.
Length = 263
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 229 LEILSK--TNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRD 402
LE+ SK + ID+ D R + EED +E+ + + ++L+D ++ V RD
Sbjct: 102 LEMESKIMADFIDHYYDSRNIT--EEDR-DELQDKLDEEAANYRDLEDRIKEV---RHRD 155
Query: 403 DVMKTIETMRDPKT 444
MKT+ET R T
Sbjct: 156 RYMKTVETERKRTT 169
>Z49068-7|CAA88859.1| 552|Caenorhabditis elegans Hypothetical
protein K01C8.8 protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 502 SMYRLAKYRYECGNYVESASYLYFCQLVMSPT-DKNYLSVLWGKLASEILVQ 654
S Y + +YR + ++ S S+LY +L P+ N V W K +I+++
Sbjct: 298 STYVIPEYRLDYYDFEGSNSFLYDIRLSQDPSIAGNVAIVFWNKKLKQIILK 349
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical protein
F36G3.1 protein.
Length = 964
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 211 ELLQAK-LEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL- 384
E++Q K E+ + V +I L + D+ + I+QR+ ++ L+E DA+ L
Sbjct: 723 EIVQRKDQELAILKEKVTNVINIENSLKDDVDSQKVIVQRQKEIIENLREELDAITKKLG 782
Query: 385 RLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 528
+ + D T+ K + ++E + +E+ D L K +
Sbjct: 783 EVTKLRDKAVEEATLYKMKNMERDRFLSREAQMSMEIEDLQRELNKQK 830
>AC084158-26|AAM15621.2| 216|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32b protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 652 VPKFR*PIYPKEPTNNSCQLATSPVD 575
V +FR P Y +PT+NS L P+D
Sbjct: 47 VGQFRRPRYSADPTSNSTDLQLRPLD 72
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 652 VPKFR*PIYPKEPTNNSCQLATSPVD 575
V +FR P Y +PT+NS L P+D
Sbjct: 215 VGQFRRPRYSADPTSNSTDLQLRPLD 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,438,230
Number of Sequences: 27780
Number of extensions: 291439
Number of successful extensions: 912
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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