Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m23
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 0.43
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 0.99
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 0.99
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 1.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 1.7
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 3.0
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 24 4.0
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 24 4.0
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 24 4.0
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 23 5.3
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 23 5.3
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 23 5.3
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 23 7.0
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 23 9.2
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 23 9.2
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 23 9.2
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 0.43
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 95 KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 190
K+ ++I+ L L+H ++K N K+VD+H
Sbjct: 443 KNIYVISTLKRPVPLEHYLWVKQNMFKIVDQH 474
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 0.99
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 33 YIKICPFWTLWSGLQTERLNAK 98
Y FW LW+G+ T R AK
Sbjct: 546 YESATAFWALWAGVATPRQAAK 567
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 0.99
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 143 HLKFLKVNYNKVVDEHVSTSQYL 211
+ K L +YNKV EHVS S+ L
Sbjct: 185 NFKSLMTSYNKVNGEHVSQSRIL 207
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 1.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 53 LDAVEWIANRAFECKDKFIINKLTNADAL 139
L ++ W+ NR F+ ++K K N+D L
Sbjct: 569 LASLGWVENRIFQMEEKLDTIKKKNSDVL 597
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 1.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 86 FECKDKFIINKLTNADALQHLKFLKVNYN 172
F C +K + N N+D+ + +KF+ + N
Sbjct: 415 FHCVNKIVANTTENSDSAEAVKFILDSQN 443
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 3.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 86 FECKDKFIINKLTNADA 136
F+C+DKF+I + DA
Sbjct: 77 FKCRDKFLIQSMAIGDA 93
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 23.8 bits (49), Expect = 4.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 33 YIKICPFWTLWSGLQT 80
+I IC FW WSG ++
Sbjct: 408 FIPICLFWFGWSGRES 423
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 23.8 bits (49), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 239 FIYTLILFTTNIDSLKRVRQQLCYNLLSKISNVAKRPR 126
F + ILF +DSLK R L ++L K+ N + P+
Sbjct: 312 FDFCFILFRDCLDSLKDCRIHLLESML-KLINKKENPK 348
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 4.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 118 FVDNKFVFAFKRSVCNPLHSVQNGHIFIYTSGAV 17
FV+N+ + F + NP+ + + G ++T+G V
Sbjct: 91 FVNNENNYQFSTAPLNPIDACRVGERKVFTTGNV 124
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 23.8 bits (49), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Frame = -3
Query: 187 FVNNFVIIYFQK------FQMLQSVRVGQFVD 110
+V+N I+ FQ+ F ++ + VGQFVD
Sbjct: 463 YVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 245 YSFIYTLILFTTNIDSLKRVRQQLCYNLLSKI 150
YS+ Y T++D K+ L Y LLS+I
Sbjct: 226 YSYFYEAYEGFTSLDDDKKALSSLKYMLLSQI 257
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 23.4 bits (48), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 39 KICPFWTL--WSGLQTERLNAKTNLLSTN 119
K CP + +SG Q+ER+N + L+ T+
Sbjct: 483 KFCPSLRVESYSGTQSERINKRYYLMDTD 511
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 119 LTNADALQHLKFLKVNYNKVVDEH 190
L+N + +LK LKV + +V D H
Sbjct: 935 LSNPNTPYYLKLLKVLFGQVPDRH 958
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 23.0 bits (47), Expect = 7.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 85 RSVCNPLHSVQNGHI 41
RS+ NPLH V + H+
Sbjct: 407 RSISNPLHLVDSQHL 421
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 22.6 bits (46), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 209 NIDSLKRVRQQLCYNLLSKISNVAKRPR 126
N LK + Q N LSK+SN+A R
Sbjct: 805 NTADLKMLMQMEYDNYLSKLSNIAGSSR 832
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 122 TNADALQHLKFLKVNYNKVVDEHVSTSQYL 211
TNA+ALQ L ++++ K+ + + S+ L
Sbjct: 160 TNAEALQTLASMRISQQKIEEAKDALSKCL 189
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 22.6 bits (46), Expect = 9.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +3
Query: 12 NVTAPLVYIKICPFWTLWS 68
++ APL+ ++C F T+W+
Sbjct: 341 SLPAPLLLNRVCEFPTVWT 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,772
Number of Sequences: 5004
Number of extensions: 14718
Number of successful extensions: 49
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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