Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m23
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 1.2
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 27 2.1
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291... 27 2.1
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312... 26 3.6
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 26 3.6
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 25 6.3
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 25 6.3
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595... 25 6.3
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 25 8.3
05_01_0339 + 2673862-2675637 25 8.3
02_01_0454 + 3263666-3265375 25 8.3
02_01_0403 - 2938242-2941334 25 8.3
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 98 DKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYLS*IKLM 229
D+FII ++T + LKF ++Y K + E +ST S K++
Sbjct: 1590 DRFIIKQVTKTELESFLKF-GLDYFKYLSESISTGSPTSLAKIL 1632
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 169 IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGHIFIYTS 26
++ + F+ Q G +DN F A N L SV++GH+F Y S
Sbjct: 806 VVNKKHFEERQPETSGHTLDNDFN-ALSAHRTN-LESVESGHLFAYNS 851
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 3 MLQNVTAPLVYIKICPFWTLWSGLQTERLNAKTNL 107
+L NV L+ +WT++S ++TER+NA L
Sbjct: 55 VLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKL 89
>04_03_0505 +
16628145-16628217,16628612-16628767,16628964-16629125,
16629699-16629842,16629952-16630028,16630710-16630874,
16630988-16631341
Length = 376
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 107 IINKLTNADALQHLKFLKVNYNKVVDEHVSTS 202
IINK+TN+D +Q K K ++VD S S
Sbjct: 344 IINKMTNSDGMQATKGSKAAVFRLVDYSESDS 375
>11_06_0554 -
24930437-24930552,24930878-24931079,24931164-24931269,
24931357-24931599,24932398-24932484,24932695-24932825,
24933177-24933183,24933695-24933789
Length = 328
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 118 FVDNKFVFAFKRSVCNPLHSVQNGHIF 38
F + K +F K C PL + +NGH +
Sbjct: 268 FAEVKMIFRRKYYFCCPLEAPENGHCY 294
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 95 KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 190
K K N+ TN DALQ + L V+Y V H
Sbjct: 372 KPKLECNEETNIDALQEDETLSVDYKNDVSIH 403
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 107 IINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYLS*IKLMY 232
I L + LQHL + N + + + ++T QYL + L Y
Sbjct: 591 IPQSLVSLKGLQHLDMSQNNLSGPIPDFLATFQYLRYLNLSY 632
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 VYKNMSVLDAVEWIANRAFECKDKFI-INKLTNADALQHLKFLKVNYNKVV 181
++KN+S L A + + +F C+D F+ ++ ++D K + +Y+K+V
Sbjct: 288 LFKNLSSLVAATIVLDDSFLCRDDFLHEDERGSSDDEDDNKTISDHYDKMV 338
>03_02_0640 -
10058828-10058971,10059066-10059201,10059512-10059590,
10060861-10060927,10061014-10061100,10061474-10061567,
10061663-10061749,10062267-10062328,10062485-10062584,
10062729-10062827,10062969-10063033,10063617-10063694,
10063787-10063873,10064383-10064466,10064860-10064955,
10065045-10065122,10066049-10066139,10066224-10066315,
10066433-10066560,10067421-10067495,10067670-10067850
Length = 669
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 71 IANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVST 199
+ + +C D+ + ++ NA L H+ +K+N+ + H T
Sbjct: 403 VRSNCIDCLDRTNVTQIANA--LMHMALVKLNFYDMEPSHTFT 443
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 118 FVDNKFVFAFKRSVCNPLHSVQNGHIF 38
F + K +F K C PL +NGH +
Sbjct: 334 FAEVKMIFRRKYYFCCPLEPRENGHCY 360
>05_01_0339 + 2673862-2675637
Length = 591
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 14 RDRSARVYKNMSVLDAVEW 70
R+ +ARV+ M V DAV W
Sbjct: 73 REDAARVFDEMRVRDAVSW 91
>02_01_0454 + 3263666-3265375
Length = 569
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 242 SFIYTLILFTTNIDSLKRVRQQLCYNL 162
S Y+++ F S+K QQLC NL
Sbjct: 20 SMAYSIVQFPVKWQSIKYKLQQLCSNL 46
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 193 NVFVNNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCN 71
N+ +NNF + ++ L+++ + NKF S+CN
Sbjct: 539 NLGINNFTGVIPKEIGQLKALLLLNLSSNKFSGGIPESICN 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,198
Number of Sequences: 37544
Number of extensions: 72321
Number of successful extensions: 242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -