Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m23
(264 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi... 28 1.6
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA... 28 1.6
X53959-1|CAA37910.1| 1480|Drosophila melanogaster slit protein p... 27 4.8
BT001382-1|AAN71137.1| 152|Drosophila melanogaster GH03029p pro... 27 4.8
AF126540-1|AAD26567.1| 1504|Drosophila melanogaster slit protein... 27 4.8
AE014296-823|AAF47882.2| 152|Drosophila melanogaster CG15012-PB... 27 4.8
AE013599-2126|AAF58097.1| 1504|Drosophila melanogaster CG8355-PC... 27 4.8
AE013599-2125|AAF58098.1| 1480|Drosophila melanogaster CG8355-PA... 27 4.8
AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB... 27 4.8
BT025961-1|ABG02205.1| 149|Drosophila melanogaster IP16087p pro... 26 6.3
X15707-1|CAA33737.1| 267|Drosophila melanogaster protein ( Dros... 26 8.3
X15469-1|CAA33496.1| 633|Drosophila melanogaster protein ( Dros... 26 8.3
U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin pro... 26 8.3
U77934-1|AAB61139.1| 541|Drosophila melanogaster presenilin hom... 26 8.3
AY061316-1|AAL28864.1| 541|Drosophila melanogaster LD23505p pro... 26 8.3
AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a... 26 8.3
AF093402-1|AAD52707.1| 541|Drosophila melanogaster presenilin a... 26 8.3
AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin s... 26 8.3
AF084184-1|AAC33129.1| 541|Drosophila melanogaster presenilin l... 26 8.3
AF017025-1|AAD01611.1| 272|Drosophila melanogaster presenilin p... 26 8.3
AF017024-1|AAD01610.1| 541|Drosophila melanogaster presenilin p... 26 8.3
AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-P... 26 8.3
AE014296-3363|AAF51598.1| 541|Drosophila melanogaster CG18803-P... 26 8.3
>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
ubiquitin-conjugatingenzyme protein.
Length = 4876
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 38 KNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQY 208
K +S L++V+ + + I++KLT A L L L+ K ++EH+S +
Sbjct: 1604 KTLSSLNSVKQTLKEEVKKEKADIMDKLTIAKFLPKLSLLESYMQKKINEHISFDDF 1660
>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
protein.
Length = 4876
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 38 KNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQY 208
K +S L++V+ + + I++KLT A L L L+ K ++EH+S +
Sbjct: 1604 KTLSSLNSVKQTLKEEVKKEKADIMDKLTIAKFLPKLSLLESYMQKKINEHISFDDF 1660
>X53959-1|CAA37910.1| 1480|Drosophila melanogaster slit protein
protein.
Length = 1480
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQ 53
NN +IY FQ L +R+ Q DN+ + +R+ L S++
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ-IHTIERNSFQDLVSLE 151
>BT001382-1|AAN71137.1| 152|Drosophila melanogaster GH03029p
protein.
Length = 152
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 64 HSVQNGHIFIYTSGAVTFC 8
H + GH+FI G ++FC
Sbjct: 46 HQITTGHVFIGIFGTISFC 64
>AF126540-1|AAD26567.1| 1504|Drosophila melanogaster slit protein
protein.
Length = 1504
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQ 53
NN +IY FQ L +R+ Q DN+ + +R+ L S++
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ-IHTIERNSFQDLVSLE 151
>AE014296-823|AAF47882.2| 152|Drosophila melanogaster CG15012-PB
protein.
Length = 152
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 64 HSVQNGHIFIYTSGAVTFC 8
H + GH+FI G ++FC
Sbjct: 46 HQITTGHVFIGIFGTISFC 64
>AE013599-2126|AAF58097.1| 1504|Drosophila melanogaster CG8355-PC,
isoform C protein.
Length = 1504
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQ 53
NN +IY FQ L +R+ Q DN+ + +R+ L S++
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ-IHTIERNSFQDLVSLE 151
>AE013599-2125|AAF58098.1| 1480|Drosophila melanogaster CG8355-PA,
isoform A protein.
Length = 1480
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQ 53
NN +IY FQ L +R+ Q DN+ + +R+ L S++
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ-IHTIERNSFQDLVSLE 151
>AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB,
isoform B protein.
Length = 1469
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQ 53
NN +IY FQ L +R+ Q DN+ + +R+ L S++
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ-IHTIERNSFQDLVSLE 151
>BT025961-1|ABG02205.1| 149|Drosophila melanogaster IP16087p
protein.
Length = 149
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 181 NNFVIIYFQKFQMLQSVRVGQFVDNK 104
NN +IY FQ L +R+ Q DN+
Sbjct: 110 NNLTVIYETDFQRLTKLRMLQLTDNQ 135
>X15707-1|CAA33737.1| 267|Drosophila melanogaster protein (
Drosophila melanogasterDNA sequence (isolate CBS) for
18S rRNA (3'end), 5.8SrRNA and 28S rRNA (5'end). ).
Length = 267
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 169 IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGHI 41
++Y L S + +DN F + + PLHSV NG +
Sbjct: 118 VVYCDNEPSLNSHTISTMLDNHFGVSIANAP--PLHSVSNGQV 158
>X15469-1|CAA33496.1| 633|Drosophila melanogaster protein (
Drosophila melanogasterDNA for complete foldback (FB)
transposable n. ).
Length = 633
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 36 IKICPFWTLWSGLQTERLNAKTNLLST 116
IK+C ++ LW+ + E+L +K ++ S+
Sbjct: 593 IKLCKYFVLWTNVMKEKLCSKYDVGSS 619
>U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin
protein.
Length = 527
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>U77934-1|AAB61139.1| 541|Drosophila melanogaster presenilin
homolog protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AY061316-1|AAL28864.1| 541|Drosophila melanogaster LD23505p
protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a1
protein.
Length = 527
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AF093402-1|AAD52707.1| 541|Drosophila melanogaster presenilin a2
protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin
short form protein.
Length = 527
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AF084184-1|AAC33129.1| 541|Drosophila melanogaster presenilin long
form protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AF017025-1|AAD01611.1| 272|Drosophila melanogaster presenilin
protein.
Length = 272
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 2 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 38
>AF017024-1|AAD01610.1| 541|Drosophila melanogaster presenilin
protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-PB,
isoform B protein.
Length = 527
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
>AE014296-3363|AAF51598.1| 541|Drosophila melanogaster CG18803-PA,
isoform A protein.
Length = 541
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 27 LVYIKICPFWTLWSGLQTERLNAKTNLLSTN*PTRTL 137
LV+IK P WT W+ L + +LS P R L
Sbjct: 257 LVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRIL 293
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,023,943
Number of Sequences: 53049
Number of extensions: 135060
Number of successful extensions: 375
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 24,988,368
effective HSP length: 66
effective length of database: 21,487,134
effective search space used: 451229814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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