Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m23
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    26   3.2  
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    26   4.2  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    26   4.2  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    25   5.6  
U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    25   7.4  
Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    25   9.8  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    25   9.8  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    25   9.8  

>Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical
           protein C47A10.7 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 239 FIYTLILFTTNIDSLKRVRQQLCYNLLSKISNVAKRPRWSI 117
           +IY+ +LF   + SL  V    CY +L K   V K  +WS+
Sbjct: 10  YIYSNVLFVIAVISLP-VHLFGCYCILFKTPEVMKSVKWSL 49


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  VYKNMSVLDAVEWIANRAFECKDKF 106
           VY+N+ V++A+   A    EC +KF
Sbjct: 2   VYQNLPVINALHCYAREKVECLEKF 26


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 35  YKNMSVLDAVEWIANRAFEC-KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 190
           Y ++   ++VE       +C KD+F+I  + N       K    NYN+ + E+
Sbjct: 308 YTSIKCQESVEKFEKSRLDCDKDQFVIGGVPNCIEWFFKKIYNANYNECLLEN 360


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/40 (20%), Positives = 25/40 (62%)
 Frame = +2

Query: 89  ECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQY 208
           +C++ +I  + T+ DA +H+ ++   +NK+++ +    ++
Sbjct: 53  QCEESYIKLEFTSHDAHRHMGWVVNQFNKMIEANKDVMEH 92


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 140 QHLKFLKVNYNKVV 181
           +H+K+LK NY+KVV
Sbjct: 292 EHIKYLKKNYDKVV 305


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 QHLKFLKVNYNKVVDEHVSTSQY 208
           Q+L  +++  N+VVD+H+ +S Y
Sbjct: 473 QYLSAIQMENNRVVDKHMHSSAY 495


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 140 QHLKFLKVNYNKVVDEHVSTSQY 208
           Q+L  +++  N+VVD+H+ +S Y
Sbjct: 473 QYLSAIQMENNRVVDKHMHSSAY 495


>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 169 IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVC 74
           I Y   F ++ ++R+G F +NK       S C
Sbjct: 51  IFYGVAFMLIANLRLGLFFENKLTLTVSTSEC 82


>AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical
           protein C36C5.5 protein.
          Length = 204

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 5   VTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINK 118
           +   ++   V K  +    V +IAN   EC+DK   NK
Sbjct: 91  IAPEEKKEMVKKIKNYCSGVSYIANDFEECRDKLAENK 128


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 54  WTLWSGLQTERLNAKTNLLSTN 119
           W L S LQT RLN   N +  N
Sbjct: 724 WHLLSSLQTRRLNGALNRMPVN 745


>U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical
           protein C25H3.7b protein.
          Length = 275

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 38  KNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYL 211
           + +S    + W   + F+  DK   +    A A++ +  L  NY  +VD+ V+ +  L
Sbjct: 98  QQISDSQVIVWKLQKHFDLDDKLEGSDRGTARAVERMIDLSTNYALLVDKTVNNAHLL 155


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 95   KDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYLS 214
            K+  I N+    +A   L+FLK  Y   +DE +   Q+++
Sbjct: 1813 KNLEISNRNPQTEAKAPLEFLKQTYLSTIDEGLPRGQFIA 1852


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 190 VFVNNFVIIYFQKFQ 146
           +FV NF+I++F KF+
Sbjct: 84  IFVPNFLIVFFSKFK 98


>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   HVTERDRSARVYKNMSVLDAVEWIANRA 85
           HVT+R   AR+ K +S  DA+ ++A+++
Sbjct: 39  HVTDRQNLARLEKELSGYDAI-YLASKS 65


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein
            T05H10.1 protein.
          Length = 1326

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 32   VYKNMSVLDAVEWIANRAFECKDKFIINKLTNAD 133
            V   M VL+  +W+A +    KD+F+I K  + D
Sbjct: 1001 VDSRMRVLEFKKWVAEQLEMDKDQFVIVKHASDD 1034


>U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical
           protein C06E2.9 protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 175 FVIIYFQKFQMLQSVRVGQFVDNKF-VFAFKRSVCNPLHSVQNGHI 41
           F+ +    F +L       F+D+   +  F+R V +  HS+ +GH+
Sbjct: 17  FITVLIFVFALLSKAVSQDFIDDSADMHRFRRHVEHQKHSLNDGHL 62


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/53 (20%), Positives = 31/53 (58%)
 Frame = +2

Query: 47  SVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQ 205
           SVLD +++  + +FE  ++    K+ N D  ++ +++    N V + ++++++
Sbjct: 5   SVLDDIDY--DSSFEMVEEEKFEKIENTDNSENFQYVSTKGNTVKEVNINSNE 55


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 2   HVTERDRSARVYKNMSVLDAVEWIANRA 85
           HVT+R   AR+ K +S  DA+ ++A+++
Sbjct: 39  HVTDRQNLARLEKELSGYDAI-YLASKS 65


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 148 QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNG 47
           ++ Q V+    V++++V A  RSV    H +QNG
Sbjct: 19  EVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNG 52


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 148 QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNG 47
           ++ Q V+    V++++V A  RSV    H +QNG
Sbjct: 36  EVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNG 69


>AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical
           protein Y49F6B.3 protein.
          Length = 294

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 35  YKNMSVLDAVEWIANRAFECKDKFIINK-LTNADALQHLKFLKVNYNKVVDE 187
           Y+ M      EW+    F  +D  ++ K LT  + ++ L F K + N  +DE
Sbjct: 85  YRYMGPTWTAEWVLKH-FGIRDWMVLVKQLTGQEEIEKLCFRKNHQNYSIDE 135


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 184 VNNFVIIYFQKFQMLQSVRVGQFVDNKF-VFAFKRSVCNPL 65
           V+NF++IY   FQ+ Q V   +++   + VF    S+C+ +
Sbjct: 21  VSNFLLIYLTIFQVKQIVGTYKYMIILYSVFGIGFSICDQI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,996,918
Number of Sequences: 27780
Number of extensions: 80782
Number of successful extensions: 264
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)