Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m21
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 42 3e-04
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 42 6e-04
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 41 7e-04
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 38 0.005
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 38 0.009
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 36 0.027
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 34 0.083
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 34 0.11
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 32 0.45
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 31 0.78
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 3.1
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 29 3.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 5.5
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 5.5
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 28 5.5
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 28 7.2
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 27 9.6
08_02_0755 - 20814074-20814268,20814909-20814965,20815047-208151... 27 9.6
02_05_1127 + 34292894-34293284,34293948-34295443 27 9.6
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 641
LR + DL L V LW L+ +G+C N +TL + ++ L+T+P YE + Q+DA
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDA 217
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 641
LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+P YE + Q+D+
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDS 245
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 516 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
+LLW L+ +G + ITL G IAL T+P Y N+ QVD
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 468 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
R + L DL L V LW L+ VG+C + +TLI + + L T+P Y+ + +VD
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVD 230
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 641
LW L+ +G+ N +TL + ++AL+T+P YE + +VDA
Sbjct: 180 LWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDA 219
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LW +G N +T+I +G+++ TLP YE + QVD
Sbjct: 208 LWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVD 246
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 34.3 bits (75), Expect = 0.083
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LR + L DL+ L V LW L+ +G+ + +TL + + L T+P Y + +VD
Sbjct: 137 LREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVD 194
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LW L +G + TL+ +G++ TLP YE + +VD
Sbjct: 147 LWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
L+ + + +CF+ +TL+ L + TLP YE +++VD
Sbjct: 141 LFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVD 179
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 504 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
+K ++LW ++Y+G FN +TLI + +P YE + QVD
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVD 161
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 510 FGVLLWCLTYVGACFNGITLIILGW 584
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 22 ARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTP-MPGSTHSDCTPK 162
A RP +TP S +H+L +VS P Q +S P M GS HS K
Sbjct: 75 ASRP-ETPRSSGAHSLSRVSLRPPQQVLSIRTSLPTMVGSQHSPAGKK 121
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 482 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDS 589
GG GG A+ R + HV G V Q HHP+L S
Sbjct: 292 GGSAGGGADGSRYWLAIHVVGVVRQTFTNHHPKLCS 327
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 7 RRESRARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTP 159
RR+ + P +PL+ ++ ALR + + PR P P P TH+ P
Sbjct: 374 RRKPPSPSPPSSPLIENTSALRSTTTTDTTIPR-NPFVQPPPPPTHTHGPP 423
>01_06_0336 +
28533251-28533350,28533548-28533641,28533760-28533901,
28534107-28534212,28534345-28534511
Length = 202
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 462 ELRRLFLV---EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQ 632
+L+R L +V +K L L+ +G+ + +L+ +G++ TLP Y+ K +
Sbjct: 106 DLKRFLLFWTNNQIVYDIKVVGSLLVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQRYKTE 165
Query: 633 VD 638
VD
Sbjct: 166 VD 167
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 186 SASRSTTPLRGAVAVGRTRHGGRGWCIA 103
S+ + +P G + + R GG GWC+A
Sbjct: 352 SSGGAASPSNGGASQQQPRGGGGGWCVA 379
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 19 RARR-P*QTPLVSHSHA-LRKVSACPSQHPRYAPSSTPMPGSTHSDCTPK 162
R+RR P +T + S A + K A P +P AP P P S ++ TPK
Sbjct: 298 RSRRTPPRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPPSRFNNTTPK 347
>08_02_0755 -
20814074-20814268,20814909-20814965,20815047-20815157,
20815291-20815344,20815731-20815943,20816655-20816773,
20816880-20816940,20817037-20817147,20817239-20817383,
20817477-20817523
Length = 370
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 HPRYAPSSTPMPGSTHSDCTPKW-SR*STGGTRHALA 204
HP P P PG++ D +W +R G RH LA
Sbjct: 325 HPMEVPIDLPPPGTSGGDSGGQWQARYVACGGRHTLA 361
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 189 RSASRSTTPLRGAVAVGRTRHGGR 118
RSASRS+ PL + A GR RH R
Sbjct: 33 RSASRSSRPLAPSRAPGRPRHPPR 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,331
Number of Sequences: 37544
Number of extensions: 211970
Number of successful extensions: 1193
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -