Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m18
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0394 - 17261008-17262476,17262554-17262743 29 1.4
08_01_0083 - 604175-605776 28 1.8
08_01_0082 - 588269-588434,590800-591653 28 1.8
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 1.8
12_01_0827 - 7662180-7662192,7662451-7662764 27 3.2
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 3.2
01_07_0315 - 42692539-42693260,42693357-42693609 27 4.2
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226... 27 5.6
01_07_0317 + 42699035-42699305,42699411-42700132 27 5.6
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 26 7.4
01_07_0318 + 42703176-42703473,42703563-42704290 26 7.4
01_06_0377 - 28867796-28868290 26 7.4
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 26 9.8
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 26 9.8
02_01_0705 - 5259949-5263887,5266207-5266509 26 9.8
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 243 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 157
KP RR +PS S VW V LL+V C
Sbjct: 4 KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32
>08_01_0083 - 604175-605776
Length = 533
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 27 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 140
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 27 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 140
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 146 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 238
+++EH T S+ HT S+ ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 144 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 236
PK Q T++ +AR +T + ++RSD ACPR
Sbjct: 25 PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 47 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 148
P + A R T A+VD A EDPG + A E
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 127 GSWIFCMCEVYPGGVC-NPSF 68
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>08_02_0393 +
16621137-16621139,16621392-16621583,16622559-16622612,
16623041-16623160,16623280-16623501,16623594-16623650,
16623993-16624046,16624395-16624426,16624888-16625023,
16625108-16625278,16625430-16625661,16626018-16626022
Length = 425
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 163 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 68
S CNF LS+ G +I+ + E++ VC+ SF
Sbjct: 82 SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 115 FCMCEVYPGGVC-NPSF 68
FCMC+ YPG C +P F
Sbjct: 89 FCMCDFYPGVSCGDPRF 105
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +3
Query: 39 FFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNT 161
F SR QK GLQTP TS EP + NT
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNT 76
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -1
Query: 115 FCMCEVYPGGVC-NPSF 68
FCMC+++PG C +P F
Sbjct: 98 FCMCDLFPGTSCGDPRF 114
>01_06_0377 - 28867796-28868290
Length = 164
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 50 VSHADAEARVTDAARVDLAHTED 118
V + DA V DAAR D AH +D
Sbjct: 18 VDNPDAARIVLDAARSDFAHNDD 40
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 180 HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 287
HS T K + + R+ F CYK V A TKP
Sbjct: 281 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 313
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 180 HSTHPTVAKERSDFVACPRLAFDCYKIVSARF*TKP 287
HS T K + + R+ F CYK V A TKP
Sbjct: 447 HSARTTSKKRNREVI---RVTFKCYKYVKADCNTKP 479
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -1
Query: 199 TVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGVC 80
T+ C C + F NF G G++ C GGVC
Sbjct: 958 TIPCGIC-GMFGLTFANFSGNRDGGTFTLADCAAEEGGVC 996
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,439,310
Number of Sequences: 37544
Number of extensions: 156373
Number of successful extensions: 447
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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