Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m18
(355 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 29 0.71
U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of a... 29 0.71
AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein. 29 0.71
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 29 0.93
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 1.6
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 1.6
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 26 8.7
AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical ... 26 8.7
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 0.71
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 148 FGGLSMNGSWIFCMCEVYPGGVCNPSF 68
FGG N SWI CMC + + P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734
>U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of
activated let-60ras protein 5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 102 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 260
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 102 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 260
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 148 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 62
FGG N SWI C+C V + P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 183 STHPTVAKERSDFVACPRLAFDCYKIVSARF 275
S H +A R A P L+FDCY++ F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 183 STHPTVAKERSDFVACPRLAFDCYKIVSARF 275
S H +A R A P L+FDCY++ F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 98 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 202
D T+ G + + EVT ATIN++T D S
Sbjct: 43 DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77
>Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 6.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 343 MIKLFIYKTVIKINYLSLAGL--V*NLADTIL*QSKAKRGQATKSLRSFATV-GCVECLA 173
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 172 -VNSSVFCNFGGLSMN 128
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 26.2 bits (55), Expect = 6.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -1
Query: 343 MIKLFIYKTVIKINYLSLAGL--V*NLADTIL*QSKAKRGQATKSLRSFATV-GCVECLA 173
++ L YK N+ L G V NL + KR + K + F V C+ A
Sbjct: 109 IVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRYSVKLWKCFQDVFNCMPVAA 168
Query: 172 -VNSSVFCNFGGLSMN 128
+++ +FC GGLS N
Sbjct: 169 LIDNKIFCCHGGLSPN 184
>Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical
protein M162.8 protein.
Length = 312
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 153 QNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF 275
+N +L+ ++ + + DF+A P+L D ++I +A F
Sbjct: 99 KNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139
>Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical
protein C09H10.7 protein.
Length = 325
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 264 TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIVACSVTS 145
T F +S PN R F P+L S NV +++ + S
Sbjct: 246 TMFASSLAPNSAGRTTHFDPTLNSPAENVLSEVISSEIDS 285
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 211 RSFATVGCVECLAVNSSVFCNFGG 140
R A +G + L VN++V CN GG
Sbjct: 342 RCRAIIGNLHRLGVNNTVVCNLGG 365
>AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical
protein F29A7.2 protein.
Length = 307
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 176 QTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKILN 280
++ TSDS G KR FGFR + + ++ N
Sbjct: 78 ESVQTSDSEHGIKRVWLKEGFGFRDWIDHILEVFN 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,212,122
Number of Sequences: 27780
Number of extensions: 136734
Number of successful extensions: 391
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -