Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m10
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    80   2e-16
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    74   1e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   3.9  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.0  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.0  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 40/71 (56%), Positives = 47/71 (66%)
 Frame = +1

Query: 412 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 591
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 592 KFPLTSEAAMK 624
             P+ SE+AMK
Sbjct: 63  VNPINSESAMK 73


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 37/71 (52%), Positives = 45/71 (63%)
 Frame = +1

Query: 412 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 591
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 592 KFPLTSEAAMK 624
             P+ SE+AMK
Sbjct: 63  VNPINSESAMK 73


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 576 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 403
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 402 YFFLSLNPSL 373
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 312 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 401
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 334 AWVWQFWLLL 305
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 334 AWVWQFWLLL 305
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,563
Number of Sequences: 5004
Number of extensions: 25598
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)