Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m10
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    82   4e-16
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     79   2e-15
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   0.75 
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    28   7.0  
07_01_0885 + 7353926-7354770,7354845-7355487                           27   9.2  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +1

Query: 418 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 597
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 598 PLTSEAAMK 624
           PLT+E+AMK
Sbjct: 86  PLTTESAMK 94


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = +1

Query: 418 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 597
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 598 PLTSEAAMK 624
           PLT+E+AMK
Sbjct: 76  PLTTESAMK 84


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 445 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 585
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 498 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 325
           E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F   + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237

Query: 324 GS 319
           GS
Sbjct: 238 GS 239


>07_01_0885 + 7353926-7354770,7354845-7355487
          Length = 495

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 461 PCSPFTTFL*ALSALVTGFTTFFCPLIPVFL 369
           P SPFT F  A+SA+       +CP++ + +
Sbjct: 204 PVSPFTVFSYAVSAIRLWKVELYCPVVAMIM 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,736,570
Number of Sequences: 37544
Number of extensions: 164304
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)