Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m10
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    82   4e-16
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    75   3e-14
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical...    27   8.3  
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 37/69 (53%), Positives = 51/69 (73%)
 Frame = +1

Query: 418 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 597
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 598 PLTSEAAMK 624
           PLT+E+AMK
Sbjct: 71  PLTTESAMK 79


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 34/71 (47%), Positives = 50/71 (70%)
 Frame = +1

Query: 412 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 591
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 592 KFPLTSEAAMK 624
           K P T+E++MK
Sbjct: 68  KAPHTTESSMK 78


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 490 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 621
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 471  YSLPMFTFYNLPLSLKCFSNRFHYFF 394
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 409 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 546
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


>AL117193-11|CAB55000.1|  174|Caenorhabditis elegans Hypothetical
           protein Y105C5A.22 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 454 EHGKRVRKI-RNSVHFRRPK-TFEPPRHPKYPRKSLPKRNRMD 576
           E  K++RKI RN  H R+   T    + P Y R+S P+RN  D
Sbjct: 122 ERRKKMRKIGRNFSHDRQQSSTSLSAQPPVYRRRSEPRRNDCD 164


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 494 ISADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLK 613
           ++ DP   +LL     + S  ++ I W+P+ S+ S+ +LK
Sbjct: 34  MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,185,360
Number of Sequences: 27780
Number of extensions: 145895
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)