Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m07
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   0.34 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   1.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    23   5.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    23   5.6  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 16  LSLAVELSPDNESSKKNMRQEIEGKLN 96
           LS  +E S  +ESSK N+  E+E K++
Sbjct: 312 LSRQIEFSKKDESSKLNILSELESKIS 338


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 80  ISCLMFFXEDSLSGDNSTASD 18
           I CL+F  + SL+ DN+ AS+
Sbjct: 691 IKCLLFPGDKSLTSDNNRASE 711


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 120 CWPGRHQIVKFTFDLLPH 67
           CW G+ +  +F  +L+PH
Sbjct: 259 CWCGKQEKPEFVKNLVPH 276


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  NESSKKNMRQEIEGKLNYLVSARPT 120
           NE+ +KN  + IE   N+ V+ +P+
Sbjct: 559 NEAEEKNDLEAIEAAKNFHVNGKPS 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.126    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,436
Number of Sequences: 5004
Number of extensions: 4753
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)