Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m07
         (121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    30   0.20 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     25   7.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    25   7.5  
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    25   9.9  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    25   9.9  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    25   9.9  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    25   9.9  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    25   9.9  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +1

Query: 1   AIVGCLSLAVELSPDNESSKKNMRQEIEGKLNYLVSARPT 120
           A+VG L L +E+   +E   +++ Q    K+N+L+S+RPT
Sbjct: 74  AVVGSLGLLLEIQKASELDSESIIQ----KINFLISSRPT 109


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 89  LPSISCLMFFXEDSLSGDNSTASDKQPT 6
           LPS S L F  EDS S  +ST +  +PT
Sbjct: 384 LPSASSL-FSQEDSSSSSSSTLTPSKPT 410


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 89  LPSISCLMFFXEDSLSGDNSTASDKQPT 6
           LPS S L F  EDS S  +ST +  +PT
Sbjct: 370 LPSASSL-FSQEDSSSSSSSTLTPSKPT 396


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 37  SPDNESSKKNMRQEIEGKLNYL 102
           SPD+++ +KN R++  G++N L
Sbjct: 583 SPDDDTKQKNRRRDGVGRVNSL 604


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 37  SPDNESSKKNMRQEIEGKLNYL 102
           SPD+++ +KN R++  G++N L
Sbjct: 658 SPDDDTKQKNRRRDGVGRVNSL 679


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 37  SPDNESSKKNMRQEIEGKLNYL 102
           SPD+++ +KN R++  G++N L
Sbjct: 592 SPDDDTKQKNRRRDGVGRVNSL 613


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 37  SPDNESSKKNMRQEIEGKLNYL 102
           SPD+++ +KN R++  G++N L
Sbjct: 736 SPDDDTKQKNRRRDGVGRVNSL 757


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 37  SPDNESSKKNMRQEIEGKLNYL 102
           SPD+++ +KN R++  G++N L
Sbjct: 583 SPDDDTKQKNRRRDGVGRVNSL 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.309    0.126    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,121
Number of Sequences: 27780
Number of extensions: 25327
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)