Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m06
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         28   0.91 
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   3.7  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.9  
SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.9  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   8.5  

>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 121 VNNHIHRLNVSGQYLRCQTRNQQ*IGIVHIIR 26
           +  H+HRL+++ Q + CQ      + I H IR
Sbjct: 55  LRTHLHRLDINVQQIVCQGNKAATVHIAHAIR 86


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 237 ALKIIANWWATILKCDTMCCVWLSFLLSVIPSITTRRP 350
           A+++  NWW      +   CVW+ +L+  I   TT RP
Sbjct: 81  AIELGLNWW------EAWICVWVGYLICGILVATTGRP 112


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 494 ESIKKIMDDTEAFEKEQEAERLRAEQTAANALLN 595
           E  K   DD+E  EKE E ER    +  A A+ +
Sbjct: 385 EPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 86  SRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAV 181
           S  +   D +VDDK+++    ++TL++M+L++
Sbjct: 606 STTVDDFDSLVDDKSIAAIGILNTLSTMILSL 637


>SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 71  AAQILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQSPPRVSSSDLAASSIKNN 250
           A+ + SRN Q  DVI   +  S E+  D+   +    +  P       +++ AAS  +++
Sbjct: 41  ASSVHSRNPQEEDVIPPKENASREDATDSEAYVRSDWDNTPIPELEKETAEKAASERQHS 100

Query: 251 SKLVGND 271
            K+  ND
Sbjct: 101 EKVTIND 107


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 161 STCLFFLPN*AFCRQQSHPPFECFWTVFALPN 66
           S C  FL       Q  HPPF  F + F +P+
Sbjct: 3   SVCSIFLSCSHRVIQAKHPPFPLFHSYFHIPD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,686
Number of Sequences: 5004
Number of extensions: 43860
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)