Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m06
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0146 - 953957-956278,956468-956786,957185-957213                 29   2.1  
08_02_0017 - 11264038-11264260,11264376-11264653                       28   5.0  
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    28   5.0  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    28   6.5  
04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556     27   8.7  

>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 446 LNKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAA 580
           LN  +   VKI+ L +E++K I +  E  ++E++ +R   + TAA
Sbjct: 463 LNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAA 507


>08_02_0017 - 11264038-11264260,11264376-11264653
          Length = 166

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 201 RRGYRPATWPHRALKIIANWW 263
           RR  + ATWP R+ + +A WW
Sbjct: 20  RRRAQGATWPKRSKEQMARWW 40


>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 7   HGAFNITL*YERFQFTVDYAFGSANTVQKHSNG 105
           HGA    L Y R  F  D+ FGSA +  ++  G
Sbjct: 18  HGAAPAVLGYTRGDFPEDFVFGSATSSYQYEGG 50


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 104 VDVIVDDKTLSLEEKIDTLTSM-VLAVNGLPQ-SPPRVSSSDLAASSIKNNSKLVGNDFE 277
           VD +V+      E    TL ++    VNG  + SP R  S D A  S+K N+ L+  D+ 
Sbjct: 509 VDYLVEASAAEAEAISATLAAVKARQVNGEAEHSPDREQSPD-ATPSVKQNASLIKPDYA 567

Query: 278 MRYN 289
           +  N
Sbjct: 568 LSNN 571


>04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556
          Length = 567

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 473 KIDRLFKESIKKIMDDTEAFEKEQEAERL 559
           K DRL +    +++D+++ F +EQE + L
Sbjct: 289 KFDRLVRPETCRVLDESQIFGREQELKEL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,447
Number of Sequences: 37544
Number of extensions: 299863
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)