Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m06
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    27   7.8  
U43282-3|AAA83614.3|  499|Caenorhabditis elegans Glutamate trans...    27   7.8  

>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 449 NKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEAER 556
           N AEE   K++    E     +DD  A EKE+ AE+
Sbjct: 547 NTAEETKPKVESFKSEETTVAIDDMPALEKEESAEK 582


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 449 NKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEAER 556
           N AEE   K++    E     +DD  A EKE+ AE+
Sbjct: 547 NTAEETKPKVESFKSEETTVAIDDMPALEKEESAEK 582


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
            R10E11.1b protein.
          Length = 2056

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 259  GGQRF*NAIQCVAYGCRFC*ALSQVLQRDDRRFSCRNRK*SVAISKLCKPR 411
            GG R+ +  +C+A     C    Q    + RR SC   K  V  +K+CK R
Sbjct: 1550 GGTRYESIQRCIASLVHAC----QCRDANCRRMSCHKMKRVVQHTKMCKKR 1596


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
            R10E11.1a protein.
          Length = 2045

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 259  GGQRF*NAIQCVAYGCRFC*ALSQVLQRDDRRFSCRNRK*SVAISKLCKPR 411
            GG R+ +  +C+A     C    Q    + RR SC   K  V  +K+CK R
Sbjct: 1539 GGTRYESIQRCIASLVHAC----QCRDANCRRMSCHKMKRVVQHTKMCKKR 1585


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 161 TSMVLAVNGLPQSPPRVSSSDLAASSIKNNSKLVGNDFEMRYNVLR 298
           TS+       P  P   S SD     IKNNS+L   D   R+N++R
Sbjct: 437 TSLSFITTRFPNGPFNFSCSDYGLF-IKNNSELNEIDVLYRFNMIR 481


>U43282-3|AAA83614.3|  499|Caenorhabditis elegans Glutamate
           transporter family protein4 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 233 MRPSRWTIPSAAIAVDHLQPTPCWSTCL 150
           ++P +WT  +    V H++ TPC +T +
Sbjct: 107 IKPGKWTTTNIEDLVGHVKTTPCVATAV 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,581
Number of Sequences: 27780
Number of extensions: 259478
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)