Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m05
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    28   1.1  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    28   1.4  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    27   2.4  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.5  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.5  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 524 RDCIYRRVSLHKNWLPRPWCYFQPSPWLPQRCP 426
           RD + +   LH N  PR  C+FQPS +     P
Sbjct: 463 RDNLRQHERLHVNASPRLACFFQPSGYYSSGAP 495


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -2

Query: 651 YSLVISLDTMF*TTVPFTSMKLANDLVTDASRV--LPFVSRITITRLYLSSCFFT*ELAS 478
           Y L IS  +     + F+  K    ++T  S++  +P+V+R     +YL++ FF   L S
Sbjct: 192 YLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTRFVFLYMYLATAFFL--LRS 249

Query: 477 QTLVLFPTFSLA 442
               + P  ++A
Sbjct: 250 LKYAVLPESTMA 261


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 419 KEKGIFVVAKEKVGNNTRVWEASSYVK 499
           K+ G+F +AK K+ N T+VW  + Y K
Sbjct: 4   KKGGLFKIAK-KLRNGTKVWARAGYFK 29


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 268 TVPLCSG-CWCGPLRTAMGLSL-SIPSIKTGSNHLCVIIFHTDGYFDPLHYIQREGHLCG 441
           T+P  +  C C     A  L + + PS +  SN  C++     GY     ++Q  GH   
Sbjct: 115 TIPKTAAKCLCNTFLNARLLQIVNNPSARKFSNEKCLLQLTRKGYSVVSEFLQHNGH--N 172

Query: 442 SQGE 453
           SQ E
Sbjct: 173 SQAE 176


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 285 WLLVWPFTHCYGIIFIHSLN-QDW 353
           W++V      Y ++F HSLN +DW
Sbjct: 162 WIMVVVLAQKYKVLFYHSLNLRDW 185


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 520 IVFIVVFLYIRTGFPDPGVISNL 452
           I F  + LY+RT F +PG +  +
Sbjct: 355 ISFTCIGLYVRTAFQNPGYVDKI 377


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 523 RNCYARHEWQHS*GI 567
           + CYA++EW+H  GI
Sbjct: 147 QKCYAKNEWRHVLGI 161


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 401 TLYTTFKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKS 580
           T++   K +GIF  + ++V NN   W         D  Y  +I    T        V +S
Sbjct: 527 TVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYYMKTG----HKQVVQS 582

Query: 581 FANF 592
           F+ F
Sbjct: 583 FSIF 586


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 502 TRR*IQSRNCYARHEWQHS 558
           T R  QSRNC+  H++Q+S
Sbjct: 18  TGRKCQSRNCFFSHDFQNS 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,799
Number of Sequences: 5004
Number of extensions: 53237
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)