Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m05
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064957-1|AAH64957.1|  226|Homo sapiens SPCS2 protein protein.       157   4e-38
BC106066-1|AAI06067.1|  226|Homo sapiens SPCS2 protein protein.       155   1e-37
D14658-1|BAA03492.1|  123|Homo sapiens KIAA0102 protein.              106   8e-23
CR542243-1|CAG47039.1|  123|Homo sapiens KIAA0102 protein.            106   8e-23
CR542233-1|CAG47029.1|  123|Homo sapiens KIAA0102 protein.            106   8e-23
BC082231-1|AAH82231.2|  123|Homo sapiens signal peptidase comple...   106   8e-23
BC070276-1|AAH70276.2|  123|Homo sapiens signal peptidase comple...   106   8e-23
BC008063-1|AAH08063.3|  123|Homo sapiens signal peptidase comple...   106   8e-23

>BC064957-1|AAH64957.1|  226|Homo sapiens SPCS2 protein protein.
          Length = 226

 Score =  157 bits (380), Expect = 4e-38
 Identities = 78/176 (44%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
 Frame = +2

Query: 155 KINKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXXWDYLYP 334
           KI+KWDG+A KN++DD++++V+    K  E+F LIDGRL               WDY++P
Sbjct: 47  KIDKWDGSAVKNSLDDSVKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHP 106

Query: 335 FPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYVKKH 505
           FP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +K+ 
Sbjct: 107 FPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRF 166

Query: 506 DDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 167 DDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 222


>BC106066-1|AAI06067.1|  226|Homo sapiens SPCS2 protein protein.
          Length = 226

 Score =  155 bits (376), Expect = 1e-37
 Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
 Frame = +2

Query: 155 KINKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXXWDYLYP 334
           KI+KWDG+A KN++DD+ ++V+    K  E+F LIDGRL               WDY++P
Sbjct: 47  KIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHP 106

Query: 335 FPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYVKKH 505
           FP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +K+ 
Sbjct: 107 FPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRF 166

Query: 506 DDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 167 DDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 222


>D14658-1|BAA03492.1|  123|Homo sapiens KIAA0102 protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


>CR542243-1|CAG47039.1|  123|Homo sapiens KIAA0102 protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


>CR542233-1|CAG47029.1|  123|Homo sapiens KIAA0102 protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


>BC082231-1|AAH82231.2|  123|Homo sapiens signal peptidase complex
           subunit 2 homolog (S. cerevisiae) protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


>BC070276-1|AAH70276.2|  123|Homo sapiens signal peptidase complex
           subunit 2 homolog (S. cerevisiae) protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


>BC008063-1|AAH08063.3|  123|Homo sapiens signal peptidase complex
           subunit 2 homolog (S. cerevisiae) protein.
          Length = 123

 Score =  106 bits (254), Expect = 8e-23
 Identities = 54/119 (45%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
 Frame = +2

Query: 326 LYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVA--KEKVG-NNTRVWEASSYV 496
           ++PFP+S+ VL +CV SYF++MGILT+YT++KEK IF+VA  K+  G +   +W+ SS +
Sbjct: 1   MHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSL 60

Query: 497 KKHDDKYNLVIV-MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSE 670
           K+ DDKY L +  +       REA  TKS A F D +GT+V +    EI++L+ SL+ E
Sbjct: 61  KRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIE 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,437,144
Number of Sequences: 237096
Number of extensions: 1993543
Number of successful extensions: 3611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3593
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)