Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20m01
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367...    30   2.0  
07_03_0980 + 23107348-23107420,23107876-23108025,23108875-231090...    30   2.0  
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345           30   2.0  
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499...    29   3.5  
07_01_1153 - 10842259-10842390,10843348-10845315                       29   4.6  
02_04_0583 + 24078766-24079800,24080585-24081643                       29   4.6  
01_05_0163 - 18773962-18774297                                         28   6.1  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    28   8.0  
04_03_0910 + 20751014-20753437                                         28   8.0  

>11_06_0485 +
           24133312-24133585,24136352-24136492,24136593-24136742,
           24136837-24136955,24137062-24137146,24137218-24137264,
           24137422-24137520
          Length = 304

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 1   EGCVVWITNISGAAETT 51
           +GCVVWIT +SG+ ++T
Sbjct: 126 KGCVVWITGLSGSGKST 142


>07_03_0980 +
           23107348-23107420,23107876-23108025,23108875-23109024,
           23109166-23109284,23109384-23109468,23109927-23109973,
           23110511-23110609
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 1   EGCVVWITNISGAAETT 51
           +GCVVWIT +SG+ ++T
Sbjct: 62  KGCVVWITGLSGSGKST 78


>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
          Length = 122

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 1   EGCVVWITNISGAAETTPS 57
           +GCV+WIT +SG+    PS
Sbjct: 97  KGCVIWITGLSGSVRFLPS 115


>06_03_0730 -
           23948801-23949079,23949528-23949588,23949828-23949954,
           23950449-23950485,23950987-23951061,23951489-23951598,
           23952700-23952754,23952833-23952949,23953201-23953355,
           23953577-23953634,23954239-23954460
          Length = 431

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 264 STSRSSCFFPGVGRCILADPDACIRRHGGFFVWTAE-TFTNSWCILSREDTHIKI 425
           S S SSCF    G  +L     C++ H   F W  E  F  S  I SR D    +
Sbjct: 9   SQSSSSCFQQHKGGLVLDGYLTCLQLHMALFYWIEELEFECSVGIASRVDVRFSV 63


>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 110 FVTELVGI-RLKHHIRVGKLGVVSAAPEIFVIHTTQP 3
           FV E+V I RL+HH  V  LG      E+F+++   P
Sbjct: 390 FVAEIVSIGRLQHHNLVQLLGYCRRRGELFLVYDYMP 426


>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 108 ERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 215
           E Y  ++YPLL  + IVP    ++    S+  T++D
Sbjct: 327 ELYLKVIYPLLEGSTIVPYVAEILLADESFGATIRD 362


>01_05_0163 - 18773962-18774297
          Length = 111

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 340 RLMHASGSASMHRPTP 293
           RL HA+G+AS HRP P
Sbjct: 20  RLNHAAGTASSHRPDP 35


>09_06_0230 + 21717225-21717301,21717888-21717972,21718045-21718165,
            21718244-21718368,21718940-21718984,21719082-21719345,
            21720067-21720111,21720182-21720212,21721644-21721693,
            21722433-21724310,21724406-21724564,21724821-21724939,
            21726917-21727059,21727670-21727735,21728184-21728317,
            21728454-21728591,21728927-21729186,21729295-21729406,
            21730727-21730909
          Length = 1344

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 485  LFSGRPSRTKHNKNDYYRRHDP 550
            L+SG+  +TK NKN Y   H+P
Sbjct: 1156 LYSGKSQKTKQNKNIYDFLHNP 1177


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 150 LLNLATGTKSLDTVRD*VGWHSLETPHPRRKTR-CGLCGPRNICNPHDATF 1
           +L +    K+L  + D  GW ++ T HP  +      CGP  ICN  D TF
Sbjct: 270 VLEVTGQRKALAWLNDTQGWQAVFT-HPNDQCEVAATCGPFTICN--DNTF 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,228,341
Number of Sequences: 37544
Number of extensions: 433986
Number of successful extensions: 1074
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)