Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20m01
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 31 0.78
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 31 1.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 31 1.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 31 1.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 31 1.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 31 1.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 31 1.0
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical ... 28 7.2
>Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical
protein T14G10.1 protein.
Length = 652
Score = 31.5 bits (68), Expect = 0.59
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 4 GCVVWITNISGAAETTPSF 60
GC +W T +SGA +TT SF
Sbjct: 56 GCTIWFTGLSGAGKTTISF 74
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 92 QPTQSRTVSSDFVPVARFNRNRTSWHGC 175
QP+ R+ SD +PVARFN N W+ C
Sbjct: 43 QPSIRRSSGSDLMPVARFN-NFKRWNSC 69
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 512 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 556
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 603 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 647
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 98 TQSRTVSSDFVPVARFNRNRTSWHG---CHENFRVIRYHIERYAI 223
T+ + +SS F P+A FNR R H+ FR I + + +AI
Sbjct: 572 TREKVISSIFAPIAVFNRGRKQTKAEKRAHKAFRTITFIVGFFAI 616
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 418 ICVSSRLNIHHELVNVSAVHTKNPP-CRLMHASGSASMHRPTPGKKHDDREVLLSLSLNI 242
IC S + +I +L ++ V+T N P C L S +K DD + LL ++ N+
Sbjct: 633 ICASYKKSIDSKLEELANVYTDNDPRCLLEGIQNSVENFEVKIHQKVDDTKKLLHITENM 692
Query: 241 LKIENGN 221
++ + N
Sbjct: 693 NELNSQN 699
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 17 GLQIFLGPQRPHRVFRRGCGVSSECQP 97
G+ I + PQ + ++R CGV EC+P
Sbjct: 562 GIVIAVNPQTGNLIWRAECGVRFECKP 588
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 17 GLQIFLGPQRPHRVFRRGCGVSSECQP 97
G+ I + PQ + ++R CGV EC+P
Sbjct: 562 GIVIAVNPQTGNLIWRAECGVRFECKP 588
>AF000299-5|AAC47977.1| 335|Caenorhabditis elegans Hypothetical
protein E03H12.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 477 ILTLQARLRVDIVTRYSKFLYAYLHDLIYTTNW 379
I +Q++ D V + +KF+ Y D YTT W
Sbjct: 205 IAGMQSKKEFDYVLKTAKFITGYTPDYQYTTVW 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,494,578
Number of Sequences: 27780
Number of extensions: 384111
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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