Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l22
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 200 4e-52
11_01_0155 - 1287003-1287452 200 4e-52
03_06_0097 - 31632238-31632525,31633386-31633769 39 0.002
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.003
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 29 2.3
02_05_1340 + 35797923-35799881 28 3.1
11_01_0523 - 4109070-4109984,4110532-4110936 28 4.0
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 4.0
06_03_0062 + 16116893-16117029,16117472-16117760 28 4.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 4.0
03_06_0594 + 34950892-34951167,34952241-34952366,34952707-349530... 27 5.3
01_01_0117 + 864966-865686,866860-866883,867006-868063 27 5.3
12_01_0730 + 6505759-6508806 27 7.1
12_01_0714 + 6223269-6226250 27 7.1
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 27 7.1
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 27 9.3
11_04_0293 + 15926561-15928834 27 9.3
01_06_0683 - 31173763-31174635,31175146-31175436 27 9.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 200 bits (488), Expect = 4e-52
Identities = 89/136 (65%), Positives = 112/136 (82%)
Frame = +3
Query: 45 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 224
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 225 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 404
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 405 PRRCEPKKFGGPGARA 452
PRRCEPKKFGG GARA
Sbjct: 127 PRRCEPKKFGGRGARA 142
>11_01_0155 - 1287003-1287452
Length = 149
Score = 200 bits (488), Expect = 4e-52
Identities = 89/136 (65%), Positives = 112/136 (82%)
Frame = +3
Query: 45 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 224
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 225 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 404
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 405 PRRCEPKKFGGPGARA 452
PRRCEPKKFGG GARA
Sbjct: 127 PRRCEPKKFGGRGARA 142
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 39.1 bits (87), Expect = 0.002
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Frame = +3
Query: 57 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 227
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 228 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 407
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 408 RRCEPKKFGGPGAR 449
R E KK G AR
Sbjct: 202 RIVERKKAGLKKAR 215
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.003
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +3
Query: 75 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 254
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 255 GGGHVAQVYAIRQAISKAL 311
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 149 WTAVYTQHSMTTLAIRNCGGGFLTSEYLD 63
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>02_05_1340 + 35797923-35799881
Length = 652
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 222 IFPCRAKGLALEVCTAAVW 166
IFP R +GL + +C+ A W
Sbjct: 560 IFPTRVRGLCIAICSLAFW 578
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 255 GGGHVAQVYAIRQAISKALIAFY 323
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 37 RQDVSPSRPSKYSDVRKPPPQLRIAS 114
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 150 MDGRLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 52
+D RL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 138 NGRPLDLVEPRLLQYKLQEPILLL 209
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>03_06_0594 +
34950892-34951167,34952241-34952366,34952707-34953018,
34954005-34954133,34954259-34954660
Length = 414
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 231 PWRIFPCRAKGLALEVCTAAVWAQPSPMDGRLHAAFHD 118
P +F RA AL + W S DG++HA HD
Sbjct: 76 PGPVFALRADMDALPIQEMVEWEFKSLEDGKMHACGHD 113
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 152 QWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCL 36
Q TAVY H++ ++ C + + + + G TSCL
Sbjct: 119 QSTAVYRPHTLKAASLVGCSRDSIDTNQYNSIVGPTSCL 157
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 179 LQQSGLNQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCLLHSSHF 18
+ GL+ +++ +TTLA+ NC + L L + LLHS++F
Sbjct: 417 ISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVPPQILNLTRLQTLLLHSNNF 470
>12_01_0714 + 6223269-6226250
Length = 993
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 179 LQQSGLNQVQWTAVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLTSCLLHSSHF 18
+ GL+ +++ +TTLA+ NC + L L + LLHS++F
Sbjct: 395 ISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVHPQILNLTRLQTLLLHSNNF 448
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 197 NPFARQGKILHGRHQSDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 334
NP +IL G SD +G C R P + G+D ++ C
Sbjct: 602 NPLIVPLEILRGHSSSDGRGVLDCKFHPRQPWLFTAGADSVVRLYC 647
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 210 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIA 317
GK+ + R++V GGG+ Q+ A IS+A ++
Sbjct: 118 GKQSNELGHARISVTGGGYFHQLLAEHTIISEAFLS 153
>11_04_0293 + 15926561-15928834
Length = 757
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 222 IFPCRAKGLALEVCTAAVW 166
IFP R +GL + +C+ W
Sbjct: 668 IFPTRVRGLCIAICSLTFW 686
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 52 PSRPSKYSDVRKPPPQLRIASV 117
PS+P+K D PP Q +++SV
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,746
Number of Sequences: 37544
Number of extensions: 313610
Number of successful extensions: 1020
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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