Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l22
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.51 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 269  YMTTTLDCHSDVDHGEFFLAEQKDWLLKFVL----QQSGLNQVQWTAVYTQ 129
            ++TTT+DC +  ++ E  + +QK+     V+    Q S  N     AV TQ
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDTNAVVTQ 1008


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 86  FLTSEYLDGLDGLT 45
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 161 NQVQWTAVYTQHSMTTLAIRNCGGGFLT 78
           N  +W  V+  HS +T+  +  G GF T
Sbjct: 204 NNTEWEIVHMSHSESTIDSK-FGLGFTT 230


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 158  QVQWTAVYTQHSMTTLAIRNCGGGFLTSE 72
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,576
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)