Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l19
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    29   0.52 
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   3.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 159 FLLLISTTAFFVTVPNSCGFTALILIHILMENRER*RYAPTKRPFRSLAHSAL 1
           FL+L  T ++ +++PN   FT     HIL  +R        KRP+R +  S+L
Sbjct: 205 FLILAGTDSYGISLPNLGIFT-----HILRNSRNDLSNYLKKRPYREVIESSL 252


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  SAVNPHEFGTVTKNAVVEI 148
           S+ NPH F +VTK  VV I
Sbjct: 216 SSANPHHFLSVTKQGVVAI 234


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 111 SSERSQKTPSSRSEVEINEELQRGSGDDEGTGRRRP 218
           +++R ++ PSS  +V  +   +RGS D   +G   P
Sbjct: 112 AAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,572
Number of Sequences: 5004
Number of extensions: 19437
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)