Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l19
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical ...    30   0.82 
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    28   3.3  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    28   4.4  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical
           protein C42C1.3 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +2

Query: 86  RISAVNPHEFGTVTKNAVVEIRSRNQRRTSARK 184
           ++S + PH+  +V KNA+  ++S+ +++TS +K
Sbjct: 156 KLSKIAPHQHSSVVKNAI--MKSKREKKTSCKK 186


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 102 IRTSSERSQKTPSSRSEVEINE-ELQRGSGDDEG 200
           IR  S    +  ++R   E++E EL RG+GDD G
Sbjct: 734 IRAHSVEHNRPSNTREASEVDEAELPRGAGDDNG 767


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 95  AVNPHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATAR 220
           A NP++    T+N V   RSRN   T+ RK GR G +  +++
Sbjct: 244 AENPYQ----TRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSK 281


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 186 HFLAEVLR*FLLLISTTAFFVTVPNSCGFTALIL 85
           H + E+LR   +L+    F +TVP+  G  A IL
Sbjct: 117 HHITEILRKREILLKVNEFVLTVPSKNGHVASIL 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,158,081
Number of Sequences: 27780
Number of extensions: 118893
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)