Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l19
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 403 HVSPAAAHAGAHQPLKXVTTQPAAAAXKRRA 495
           HV+P + H  +  PL   T        +RRA
Sbjct: 512 HVAPPSGHHASSAPLLAATLAGGLCPHRRRA 542


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 144 RSEVEINEELQR 179
           RS ++INEE+QR
Sbjct: 482 RSGIDINEEIQR 493



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 192 DEGTGRRRPGEPLAGLD 242
           DEGT RRR     +G+D
Sbjct: 470 DEGTVRRRVAVDRSGID 486


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 449 LRGWCAPACAAAGD 408
           LR +  P C A GD
Sbjct: 70  LRAYTCPICGACGD 83


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 362 SASATPTWRLLGELTCHPQRH 424
           + ++T T  L G L+ HPQ+H
Sbjct: 182 TTTSTGTRLLHGILSQHPQQH 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,778
Number of Sequences: 438
Number of extensions: 1464
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)