Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l17
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 192 1e-49
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 192 2e-49
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 192 2e-49
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 190 1e-48
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 43 2e-04
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 35 0.045
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 29 2.9
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 3.9
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 3.9
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 6.8
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 8.9
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 192 bits (469), Expect = 1e-49
Identities = 93/187 (49%), Positives = 124/187 (66%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M+VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 595
LLGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN
Sbjct: 122 LLGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQN 176
Query: 596 VHLSINF 616
+ +S+NF
Sbjct: 177 IQMSVNF 183
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 192 bits (468), Expect = 2e-49
Identities = 92/187 (49%), Positives = 125/187 (66%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
++VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 LKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 595
LLGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ QN
Sbjct: 122 LLGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQN 176
Query: 596 VHLSINF 616
V +S+NF
Sbjct: 177 VQMSVNF 183
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 192 bits (467), Expect = 2e-49
Identities = 93/186 (50%), Positives = 124/186 (66%)
Frame = +2
Query: 59 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 238
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 239 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRL 418
+VC+LGD QH +EA+ + + M SE++IKQIPRL
Sbjct: 81 KVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 140
Query: 419 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 598
LGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN+
Sbjct: 141 LGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNI 195
Query: 599 HLSINF 616
+S+NF
Sbjct: 196 QMSVNF 201
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 190 bits (462), Expect = 1e-48
Identities = 98/209 (46%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M+VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 416 LLGPGLNKA----------------------GKFPGLLSHQESMTQKIDEVKGTIKFQMK 529
LLGPGLNKA GKFP L++HQES+ K++E K T+KFQ+K
Sbjct: 122 LLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLK 181
Query: 530 KVLCLSVAVGHVDMTPDELAQNVHLSINF 616
KVLC+ VAVG+ M ++ QNV +S+NF
Sbjct: 182 KVLCMGVAVGNCAMEEKQIFQNVQMSVNF 210
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 43.2 bits (97), Expect = 2e-04
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Frame = +2
Query: 107 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 283
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
Query: 284 TLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGP-GLNKAGKFPGL 460
+ L K + R+LGP GL K G
Sbjct: 338 AAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSK-VARILGPRGLMPNPKL-GS 395
Query: 461 LSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNV 598
+++ S K + G + F++ K + V +G ++ + + L +N+
Sbjct: 396 VTNDVSGAVKAAK-SGRVDFKIDKTAIVHVGLGKINFSDENLRENI 440
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 35.1 bits (77), Expect = 0.045
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 32 GSLTNKMSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 208
G+ + +S + T +E + + LQS K K R +E + D + K + +
Sbjct: 242 GNRRSSISKEDVNATRWEQLKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLL 301
Query: 209 KLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 304
K + PK +VCV D +CD+ VP +
Sbjct: 302 KAPFCIHPKTGRVCVPIDPNNCDDFDPTTVPTL 334
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 392 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 568
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 569 MTPDELAQNVHLSI 610
M ++ +NV ++
Sbjct: 205 MKEEDTVENVMAAV 218
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 533 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 426
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 206 QCRRNACPSVGHSSSDQFEALQSPKS 129
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 239 AFSAAVCILALQCRRNACPSVGH 171
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 398 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 517
++ + +LG N K+ LL + + KIDE++ ++K
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,560
Number of Sequences: 37544
Number of extensions: 350145
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -