Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l16
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         46   1e-05
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    27   6.1  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 89  IDYVGQAKAEKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYR 268
           +D+ GQ  AE L + ++   ++  FV GY +  F   +             TVP WP + 
Sbjct: 1   MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60

Query: 269 RNPLNW 286
           R+PL W
Sbjct: 61  RHPLKW 66


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 190 LAVSVYSWCRISACCHSYCSSMANVPTQSSELAGS*ER**QTSSQERKEVKSIISKFVCT 369
           L VS YSW       + +CS++    T SS           TS++E+K+ K+I+  ++  
Sbjct: 100 LKVSHYSWLSNIEFSNCFCSAIIGKQTGSS-----------TSAEEQKQ-KNILHCWISW 147

Query: 370 TFTSQIYPIVNKF 408
            F+  + P+V  +
Sbjct: 148 LFSDIVIPVVRTY 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,629
Number of Sequences: 37544
Number of extensions: 176521
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)