Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l14
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 279 NCTELFFAININTESVLPSPMSSASTPP 196
           NC +L++ IN   +  +P P+   + PP
Sbjct: 103 NCKKLYYNINYIEQIPIPVPVYYGNFPP 130


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 279 NCTELFFAININTESVLPSPMSSASTPP 196
           NC +L++ IN   +  +P P+   + PP
Sbjct: 108 NCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 279 NCTELFFAININTESVLPSPMSSASTPP 196
           NC +L++ IN   +  +P P+   + PP
Sbjct: 108 NCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 279 NCTELFFAININTESVLPSPMSSASTPP 196
           NC +L++ IN   +  +P P+   + PP
Sbjct: 108 NCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 323 VTENKKHNLNFNILKYYKSLNAD 391
           ++ N  HN N+N   YY  +N +
Sbjct: 318 LSNNTIHNNNYNKKLYYNIINIE 340


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 17  IEENSRLATMDNYKLQLQKFFDQAPDNDD 103
           +EEN      D  ++ + +   ++P ND+
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSKSPPNDE 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,135
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)