Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l13
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    79   3e-14
UniRef50_Q245H8 Cluster: Putative uncharacterized protein; n=1; ...    34   0.94 
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ...    33   2.2  
UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  
UniRef50_Q6DHI6 Cluster: Zgc:92287; n=2; Danio rerio|Rep: Zgc:92...    32   5.0  
UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculu...    32   5.0  
UniRef50_A5BTA1 Cluster: Putative uncharacterized protein; n=2; ...    31   6.6  
UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation element-bin...    31   8.7  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 79.0 bits (186), Expect = 3e-14
 Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +1

Query: 76  MGFFTALIVNIVGGAVLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXXYYGNLMAGSI 252
           MG   AL VN+VGGA++   GG L PIVAP+LGF                YYGN++AGS+
Sbjct: 1   MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60

Query: 253 ISKLTAAAMIAPTP 294
           IS+LT+AAM+APTP
Sbjct: 61  ISQLTSAAMLAPTP 74


>UniRef50_Q245H8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1628

 Score = 34.3 bits (75), Expect = 0.94
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = +3

Query: 96  NSQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKH-CSFSPVVLREFNG------RKHY 254
           N    + +++ H  +    R  SA LQ+   N  KH  + SP+ +  +N        + Y
Sbjct: 628 NFNEDKENQTPHNSLSVKQRENSANLQKGYGNSNKHQANLSPISITPYNQSLQNSCNQSY 687

Query: 255 IKVDCRRHDSTNSVRHYISLSKTDNCCSSTYSGF 356
           IKVD       N+ +  + +S  +N   ++YS F
Sbjct: 688 IKVDKEDKVKLNNQKQKLDISADENIQDTSYSMF 721


>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 887

 Score = 33.1 bits (72), Expect = 2.2
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 170 PSRGATIGIKNP-PMQRTAPPTMLTIRAV-KNPMILKSQ*LLT 48
           PS GA    ++P P    AP    T+R V KNP +LKS  LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781


>UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 108

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = +1

Query: 28  LICIVYLVRSYCDLRIMGFFTALIVN-------IVGGAVLCMGGFLIPIVAPLLG 171
           LIC++Y++ S+  +  +G  TAL  N       I G A++ +  F+I I++ +LG
Sbjct: 18  LICMIYIIYSWMSITNVGVVTALTHNNGDAMLLIFGAAIVLIVFFIIDIISLILG 72


>UniRef50_Q6DHI6 Cluster: Zgc:92287; n=2; Danio rerio|Rep: Zgc:92287
           - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 285

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 16  VYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGAVLCMGGF 141
           V+ +++C++Y++ S  D ++   FTAL+  +   A+ C+  F
Sbjct: 241 VFLMVVCLLYIIYSCMDEQLSSPFTALLDGLHESALTCISSF 282


>UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculum
            reducens MI-1|Rep: YD repeat protein - Desulfotomaculum
            reducens MI-1
          Length = 2558

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 73   IMGFFTALIVNIVGGAVLCMGGFLIPIVAPLLG 171
            + G  TAL V ++GGA +  G +  P+VA L G
Sbjct: 2255 LYGGLTALAVGLIGGAAVGTGDYASPVVAALAG 2287


>UniRef50_A5BTA1 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 538

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = +3

Query: 99  SQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPVV--LREFNGRKHYIKVDCR 272
           +++R+  ++LH  +F+   G ++ LQ+I  N GK   F+ ++  LR  + RK Y++V  +
Sbjct: 281 TENRKADKALHTLMFEKLEGDTSILQKI-RNSGKEDLFAELLCFLRFGSLRKSYLQVTSQ 339

Query: 273 R 275
           R
Sbjct: 340 R 340


>UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation
           element-binding protein 4; n=20; Euteleostomi|Rep:
           Cytoplasmic polyadenylation element-binding protein 4 -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 635

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 75  HGIFHCPNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGK 200
           H  F  P++QHRR S S H   F        +L  +GNN  K
Sbjct: 169 HPHFQHPHNQHRRSSASPHPPPFSHRSAAFNQLPHLGNNLSK 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,714,001
Number of Sequences: 1657284
Number of extensions: 8358089
Number of successful extensions: 19970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19962
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)