Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l13
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   0.84 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   2.6  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   4.5  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   5.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   7.8  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 156 HDWDQKPSHAKNGSAYDVDY*GSEK 82
           HD  ++PSH K+ SA  +D   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 278
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 207 SFSPVVLREFNG--RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSTYSGF 356
           S+S V+    N   R++ IKV  +RH        Y+++ K   C  S + GF
Sbjct: 109 SYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALCILSKHPGF 160


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 81  IFHCPNSQHRRRSRSLHGRVFD 146
           +FHC +S HR    +LH R  D
Sbjct: 477 VFHCEHSAHRAPHLALHFRNTD 498


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 279 DSTNSVRHYISLSKTDNCCSSTY 347
           DST  +R  IS ++TDN    TY
Sbjct: 241 DSTGEIRKKISRAQTDNIKGITY 263


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 95 RAVKNPMILKSQ*LLT 48
          RAVKNPMIL+ +  LT
Sbjct: 12 RAVKNPMILEKERQLT 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,778
Number of Sequences: 5004
Number of extensions: 35585
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)