Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l13
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 1.3
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 1.3
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 29 1.3
Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 5.1
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 5.1
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 5.1
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 6.8
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 6.8
AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 16 VYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 126
++ L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 419 LFPQLLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 201 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSST 344
+CS +P V E + K H S N+ ++ +DNCC+ T
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTET 817
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 201 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSST 344
+CS +P V E + K H S N+ ++ +DNCC+ T
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTET 817
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 16 VYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 126
++ L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 419 LFPQLLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical
protein F14H3.7 protein.
Length = 432
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 273 RHDSTNSVRHYISLSKTDNCCSSTYSGFKMS*IP 374
R ++ ++HY SL K S + GFK+ IP
Sbjct: 177 RENTYQRIKHYFSLMKCPGVKSLSLGGFKLQEIP 210
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 263 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 123
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -2
Query: 263 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 123
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 138 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 260
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 138 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 260
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +3
Query: 195 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSS 341
G+HC + + R+H+I+ +CR D NCC++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTA 1370
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +3
Query: 195 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSS 341
G+HC + + R+H+I+ +CR D NCC++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTA 1370
>AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical
protein C18H7.10 protein.
Length = 342
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -3
Query: 403 FFFPSHHIYFGI*DILNPEYVDEQQLSVFDKLM*CLTELVLSWRRQS 263
+ F + YF + D +P+Y D + ++D ++ +T + + R++
Sbjct: 59 YSFLREYFYFAVLDANSPKYPDRFHVDMYDIIVPLITSFLFYFARKN 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,945
Number of Sequences: 27780
Number of extensions: 200094
Number of successful extensions: 426
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -