Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l10
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 31 0.53
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical p... 29 3.7
Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical pr... 28 4.9
U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical pr... 28 4.9
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 28 6.5
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 28 6.5
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 27 8.6
U29244-11|AAC71092.1| 201|Caenorhabditis elegans Hypothetical p... 27 8.6
AF016420-6|AAB65311.3| 530|Caenorhabditis elegans Udp-glucurono... 27 8.6
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 331
+ +++ DER + FA + + +NN+KS A ST K R+I ++ S I+
Sbjct: 75 LQSMKNLVDERITEITHHEFADLKKGMNNVKS-----SATSSTDKK-RKIGEDEDSQIEV 128
Query: 332 RIEKQLQ-FLTPLNKNFITYSVEDSISSNEVLDNI 433
+ +K+ + ++ P + T+S E + D +
Sbjct: 129 KRKKESRNYIPPSTPDSGTHSTESDMIEEPNSDEV 163
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 221 LQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFL---TPLNKNFITYS 391
L +L N K K+E+YE Q K ++ R +++++ +Q + LN +
Sbjct: 115 LSKLQNAKDKLEIYETQEENQKLEAEVNALRKEVLESKLSEQSELSKVNETLNMKVESLK 174
Query: 392 VEDSIS 409
+E+ +S
Sbjct: 175 IEEGVS 180
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 260 YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 427
YE ++S K R K+ + +++K+ Q F++P D +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344
Query: 428 NIDLEYDDGVDFDVYDE 478
D+E+D+G+DFD D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 260 YEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ----FLTPLNKNFITYSVEDSISSNEVLD 427
YE ++S K R K+ + +++K+ Q F++P D +S ++ +
Sbjct: 1287 YE-KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNS-DMSE 1344
Query: 428 NIDLEYDDGVDFDVYDE 478
D+E+D+G+DFD D+
Sbjct: 1345 ESDVEFDEGIDFDSDDD 1361
>Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 245 SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 337
SK E + Q CK+ RQ+KQ +S+ K I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 29 GVKLLGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFER 151
G+ +LG CA+I LS N V F ++ +F++
Sbjct: 164 GILILGNCAIIFKLSAQNDQVKMQNDVFEKVDPRCAEIFQK 204
>Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 245 SKIELYEAQVSTCKNVRQIKQNRSSNIKTRI 337
SK E + Q CK+ RQ+KQ +S+ K I
Sbjct: 774 SKTEYIKKQAKQCKSFRQVKQTAASDSKDDI 804
>Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical
protein C54G4.3 protein.
Length = 245
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/97 (22%), Positives = 46/97 (47%)
Frame = +2
Query: 143 FERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSN 322
F+R+ G+ H DE+ + N + Q++ K+ + A K+V+ +++
Sbjct: 41 FDRIRGMMHELDEQIHKDRSGNSKWMNQKMEKAKATADQALASTLMVKDVQLLEK----- 95
Query: 323 IKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNI 433
K I K + + +NK+F Y E + N+++D +
Sbjct: 96 -KVNILK--ESVVQVNKSF--YKYEKDVDMNDLMDQV 127
>U40800-8|ABB51192.1| 349|Caenorhabditis elegans Hypothetical
protein D2096.7b protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 299 IKQNRSSNIKTRIEKQLQFLTPLNKNF--ITYSVEDSISSNEVLDNIDLEYDDGVDFD-V 469
I+ R ++KTR+ +++ FL + NF + ++ + +S ++ + G F+
Sbjct: 31 IENERRYDVKTRLCERIAFLIYQDSNFGRLPHNSSEVFAS---INRLCKSMPTGFSFEGR 87
Query: 470 YDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTN 586
Y Y+P + T SD N +R++ ++T+
Sbjct: 88 YSNYDPETFVGPSTTSDTLQNFPNHSLERILCATLLSTS 126
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -3
Query: 583 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 413
G D + +H V+ R+L Q V P R + +N +++ + VVQ +
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356
Query: 412 A*NAVFHRVCDE 377
A N F ++ E
Sbjct: 357 APNFFFSKILTE 368
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -3
Query: 583 GGDRVQKHYSVFGRVLEQSFRVGYSHVAPMRGRFVFIVNVKINAVVIFQIDVVQ---HFV 413
G D + +H V+ R+L Q V P R + +N +++ + VVQ +
Sbjct: 297 GQDLLSRHQQVYARILLQMCMVSNPRTGPGRYAAILAINQRLDRQSVITNRVVQCLREYW 356
Query: 412 A*NAVFHRVCDE 377
A N F ++ E
Sbjct: 357 APNFFFSKILTE 368
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 392 VEDSISSNEVLD-NIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFL 568
V++S S + + L YD ++FD D+ S+ D KA +P D + F+
Sbjct: 1296 VKNSYCSEKTITCTCQLGYDLEMNFDDKDDKGKCKKNSDSKYHDLKATTASPFDDELYFI 1355
Query: 569 DTVTTNNVS 595
D + N+ S
Sbjct: 1356 DISSMNHES 1364
>U29244-11|AAC71092.1| 201|Caenorhabditis elegans Hypothetical
protein ZK1248.11 protein.
Length = 201
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 227 ELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSI 406
E+ N K+ ELYE T KNV+ +Q IK+ ++ + + +S +D I
Sbjct: 79 EVPNEKALEELYEKAKKTHKNVKGERQYFKDIIKSIRDESKNDENEMEVMQVQHSRKDPI 138
Query: 407 SSNEVLDNI 433
S ++++ +
Sbjct: 139 SKKDIVNPV 147
>AF016420-6|AAB65311.3| 530|Caenorhabditis elegans
Udp-glucuronosyltransferase protein7 protein.
Length = 530
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 111 NVIRSRPTTVFVVDNKII-SAHVPSNFTPSMINV 13
N+++ RP TVF+ +I SA +P + ++I V
Sbjct: 293 NILQKRPNTVFISFGSVIRSADMPQEYKNAIIEV 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,490,168
Number of Sequences: 27780
Number of extensions: 270163
Number of successful extensions: 889
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -