Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l09
         (129 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41718 Cluster: Occlusion-derived virus envelope protei...    72   2e-12
UniRef50_Q91BJ8 Cluster: Occlusion-derived virus envelope protei...    51   6e-06
UniRef50_Q66209 Cluster: Occlusion-derived virus envelope protei...    44   9e-04
UniRef50_Q9DW14 Cluster: PxORF16 peptide; n=2; Granulovirus|Rep:...    37   0.076
UniRef50_UPI00006CFA30 Cluster: hypothetical protein TTHERM_0044...    31   6.6  
UniRef50_Q5CT06 Cluster: Predicted secreted protein, signal pept...    30   8.8  

>UniRef50_P41718 Cluster: Occlusion-derived virus envelope protein
           E56; n=21; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E56 - Choristoneura fumiferana
           nuclear polyhedrosis virus (CfMNPV)
          Length = 379

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 32/42 (76%), Positives = 34/42 (80%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
           NVL APS RNLGN R+ PGY LSNN+FVS  DINRITR NDV
Sbjct: 38  NVLRAPSTRNLGNGRFEPGYNLSNNQFVSAGDINRITRGNDV 79


>UniRef50_Q91BJ8 Cluster: Occlusion-derived virus envelope protein
           ODV-E56; n=3; Nucleopolyhedrovirus|Rep:
           Occlusion-derived virus envelope protein ODV-E56 -
           Spodoptera litura multicapsid nucleopolyhedrovirus
           (SpltMNPV)
          Length = 371

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   NVLNAPSVRNLGN-NRYXPGYQLSNNRFVSTSDINRITRNND 125
           +V +APS R + N N   PGY LSNNRFVST++IN   RN+D
Sbjct: 37  HVFSAPSTRPIANSNSVTPGYNLSNNRFVSTAEINSALRNSD 78


>UniRef50_Q66209 Cluster: Occlusion-derived virus envelope protein
           E56; n=11; Granulovirus|Rep: Occlusion-derived virus
           envelope protein E56 - Cydia pomonella granulosis virus
           (CpGV) (Cydia pomonellagranulovirus)
          Length = 355

 Score = 43.6 bits (98), Expect = 9e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 9   LNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
           LN P+   L N  Y PGY + N  F+S +++N + RNNDV
Sbjct: 38  LNNPTTMGLANGTYVPGYNI-NGAFISNTNVNTVLRNNDV 76


>UniRef50_Q9DW14 Cluster: PxORF16 peptide; n=2; Granulovirus|Rep:
           PxORF16 peptide - Plutella xylostella granulovirus
          Length = 351

 Score = 37.1 bits (82), Expect = 0.076
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +3

Query: 9   LNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
           L+AP VR +    + PGY + N+RFV  + +N + RNNDV
Sbjct: 38  LSAPDVRPVATG-FEPGYVI-NDRFVPNARVNNVMRNNDV 75


>UniRef50_UPI00006CFA30 Cluster: hypothetical protein TTHERM_00441910;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00441910 - Tetrahymena thermophila SB210
          Length = 2316

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 30   NLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
            N  NNR  P     NN   S S I+RIT N D+
Sbjct: 1626 NNNNNRSFPNLANQNNNNSSNSSISRITNNTDL 1658


>UniRef50_Q5CT06 Cluster: Predicted secreted protein, signal peptide;
            n=3; Cryptosporidium|Rep: Predicted secreted protein,
            signal peptide - Cryptosporidium parvum Iowa II
          Length = 2995

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 6    VLNAPSVRNLGNNRYXPGYQLSNN 77
            +LN+  +RN+  N+  P YQ+SNN
Sbjct: 2288 ILNSFELRNINTNKNNPSYQVSNN 2311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,423,489
Number of Sequences: 1657284
Number of extensions: 1175725
Number of successful extensions: 2958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of database: 575,637,011
effective HSP length: 23
effective length of database: 537,519,479
effective search space used: 10212870101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)