Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l09
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    23   7.3  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    22   9.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    22   9.7  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 39  NNRYXPGYQLSNNRFVSTSDIN 104
           N+ Y     LSNN FVSTSD++
Sbjct: 369 NSLYPSKATLSNN-FVSTSDLS 389


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 50  ISVVSKVAYTGRVEH 6
           +  V+KV++ GR+EH
Sbjct: 182 MKTVNKVSFLGRIEH 196


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 54   PGYQLSNNRFVSTSDINRITRNND 125
            P Y+ SN R  S SD++      D
Sbjct: 1168 PSYENSNRRLQSVSDLSWYVNKTD 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,346
Number of Sequences: 5004
Number of extensions: 4339
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)