Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l09
         (129 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21918| Best HMM Match : STT3 (HMM E-Value=0)                        27   3.1  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   25   7.2  
SB_54580| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_21918| Best HMM Match : STT3 (HMM E-Value=0)
          Length = 520

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 13  TRPVYATLETTDIXRAINYLTT 78
           TR V ATL + D+ R  NY TT
Sbjct: 96  TRSVTATLASADVRRYFNYRTT 117


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNND 125
           N  N  +  N  NN      + +NNR  S+++ NR  RNND
Sbjct: 85  NNSNNNNRNNNSNNNSNNNNRSNNNRNNSSNNNNRSNRNND 125


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  NLGNNRYXPGYQLSNNRFVSTSDINRITRNND 125
           N  NN Y      +NN F  ++D N   RNN+
Sbjct: 215 NDNNNHYRNSNDNNNNHFRKSNDNNNHYRNNN 246


>SB_54580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 48  YXPGYQLSNNRFVSTSDINRITR 116
           Y PGY L  N+ VS     ++TR
Sbjct: 53  YFPGYPLDQNQTVSRQKARQLTR 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,445
Number of Sequences: 59808
Number of extensions: 36732
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 16,821,457
effective HSP length: 23
effective length of database: 15,445,873
effective search space used: 293471587
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)