Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l09
         (129 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical pr...    29   0.60 
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    25   7.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    25   7.4  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    25   7.4  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    25   7.4  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    25   7.4  
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       25   9.8  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       25   9.8  

>Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical
           protein F58H1.5 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 33  LGNNRYXPGYQLSNNRFVSTSDINRITRNND 125
           + + ++ P  Q S+N+FVS SDI  I  + D
Sbjct: 28  ISDEKFEPAEQCSSNQFVSISDIGTIYDSED 58


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
           + LN  ++R+  N RY   Y+L  N      +  ++  N D+
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDM 262


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQLSNNRFVSTSDINRITRNNDV 128
           + LN  ++R+  N RY   Y+L  N      +  ++  N D+
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDM 262


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQ 65
           NV+NA + R  G NR+  GY+
Sbjct: 89  NVINAMNERGGGRNRFEKGYR 109


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQ 65
           NV+NA + R  G NR+  GY+
Sbjct: 89  NVINAMNERGGGRNRFEKGYR 109


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   NVLNAPSVRNLGNNRYXPGYQ 65
           NV+NA + R  G NR+  GY+
Sbjct: 89  NVINAMNERGGGRNRFEKGYR 109


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  RNLGNNRYXPGYQLSNNRFVSTSDINRITRN 119
           RN GNNRY P  ++  +R     D NR+T N
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTEN 37


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  RNLGNNRYXPGYQLSNNRFVSTSDINRITRN 119
           RN GNNRY P  ++  +R     D NR+T N
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTEN 37


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  RNLGNNRYXPGYQLSNNRFVSTSDINRITRN 119
           RN GNNRY P  ++  +R     D NR+T N
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTEN 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,473
Number of Sequences: 27780
Number of extensions: 25698
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)