Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l09
         (129 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   2.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   5.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    18   9.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          18   9.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  YQLSNNRFVSTSDINRITRNN 122
           Y++ N      S +N+ITRN+
Sbjct: 541 YEIDNWMLDLNSGLNKITRNS 561


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  YQLSNNRFVSTSDINRITRNN 122
           Y++ N      S +N+ITRN+
Sbjct: 541 YEIDNWMLDLNSGLNKITRNS 561


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 24  VRNLGNNRYXPGYQLSNNRFVSTSDINRITRNN 122
           + +L NN     Y   NN + + ++ N    NN
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 50  ISVVSKVAYTGRVEHI 3
           + ++  +AY+GR+  I
Sbjct: 358 VKIIQNLAYSGRMNRI 373


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 60  YQLSNNRFVSTSDINRITRNNDV 128
           Y++  NR++ T+D   + R+ DV
Sbjct: 105 YEVLENRWLFTTDWCDVWRSLDV 127


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3

Query: 30  NLGNNRYXPGYQLSNN 77
           N  NN Y   Y   NN
Sbjct: 328 NYNNNNYNNNYNNYNN 343


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -1

Query: 108 FCLCXKCSQT 79
           +C C KC  T
Sbjct: 3   YCTCEKCKIT 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,144
Number of Sequences: 438
Number of extensions: 379
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)